CF838858

Overview
NameCF838858
Unique NameCF838858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECO55 (Carnitine operon protein caiE OS=Escherichia coli (strain 55989 / EAEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21
Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECO24 (Carnitine operon protein caiE OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21
Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_SHIFL (Carnitine operon protein caiE OS=Shigella flexneri GN=caiE PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21
Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_SHIF8 (Carnitine operon protein caiE OS=Shigella flexneri serotype 5b (strain 8401) GN=caiE PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21
Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_SALPB (Carnitine operon protein caiE OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiE PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21
Identity = 58/159 (36.48%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA 702
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+Q   ++H            T + +N  +GH A+LHGC V  +A VGM + ++DG V+    +VAA S V+   +  + ++  G+PA+ LR++TD+E+ +   +   Y +LA
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQYGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKRLNTKEYQDLA 163          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLC (Carnitine operon protein caiE OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiE PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.454e-21
Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   11 PIVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLIGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ESCF3 (Carnitine operon protein caiE OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=caiE PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.123e-21
Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL 699
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELRWKHLNTKEYQDL 162          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_SHIDS (Carnitine operon protein caiE OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiE PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20
Identity = 59/177 (33.33%), Postives = 91/177 (51.41%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741
            P V   AFV PSA +IG V VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   11 PVVHPTAFVHPSAVLIGYVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_CITK8 (Carnitine operon protein caiE OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.754e-19
Identity = 55/159 (34.59%), Postives = 85/159 (53.46%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA 702
            P V  +A+V PSA +IGDV VG G  I     LRGD   + + +G N+QD  ++H            T + +N  +GH A+LHGC +  +A VGM + ++DG ++    +VAA S V+        ++  G PA+  R +TDEE+ +   +   Y +LA
Sbjct:   11 PVVHPEAYVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGANLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVIGRDALVGMNSVIMDGAIIGEESIVAAMSFVKAGFVGAPRQLLVGAPARVKRDVTDEELHWKRLNTQEYQDLA 163          
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_PROSL (Carnitine operon protein caiE OS=Proteus sp. (strain LE138) GN=caiE PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.667e-19
Identity = 49/158 (31.01%), Postives = 87/158 (55.06%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL 699
            P V   A++ PSA +IGDV +G G  I     LRGD   + V +G N+QD  ++H          + T + +N  +GH A+LH C +  ++ VGM + ++DG ++    +VAA S V+   +  + ++  G+PAK +R ++D+++ +   +   Y +L
Sbjct:   11 PVVHPTAYIHPSAVLIGDVIIGAGVYIGPLASLRGDYGRLIVEAGANLQDGCVMHGYTD------MDTIVQENGHIGHGAILHSCIIGRDSLVGMNSVIMDGAIIGEESIVAAMSFVKAGFQGQARQMLMGSPAKHVRDISDQDMQWKRMNTREYQDL 162          
The following BLAST results are available for this feature:
BLAST of CF838858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CAIE_ECO552.448e-2133.90Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO242.448e-2133.90Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_SHIFL3.197e-2133.90Carnitine operon protein caiE OS=Shigella flexneri... [more]
CAIE_SHIF83.197e-2133.90Carnitine operon protein caiE OS=Shigella flexneri... [more]
CAIE_SALPB3.197e-2136.48Carnitine operon protein caiE OS=Salmonella paraty... [more]
CAIE_ECOLC5.454e-2133.90Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ESCF37.123e-2136.08Carnitine operon protein caiE OS=Escherichia fergu... [more]
CAIE_SHIDS2.707e-2033.33Carnitine operon protein caiE OS=Shigella dysenter... [more]
CAIE_CITK81.754e-1934.59Carnitine operon protein caiE OS=Citrobacter koser... [more]
CAIE_PROSL6.667e-1931.01Carnitine operon protein caiE OS=Proteus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06M23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838858 ID=CF838858; Name=CF838858; organism=Citrus sinensis; type=EST; length=840bp
CAAAACCTCACTCAACTTGAGCTCCAAAAGTATCGACACTCAGTCACCGA
TCCCCAAAGCCAACAAGAGATGGGAACCCTAGGGCGAGCAGTTTACACCG
TTGGCTTCTGGATTCGCGAAACCGGTCAGGCCCTTGATCGCCTCGGCTGC
CGTCTCCAAGGCAACTACTACTTCCAAGAGCAACTGTCTAGGCATCGAAC
TCTGATGAACATATTTGATAAAGCTCCCGCAGTCGACAAGGATGCATTTG
TTGCTCCAAGTGCCTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCA
TCTATTTGGTATGGATGTGTTTTGAGAGGGGATGTGAATAGCATCAGTGT
TGGATCAGGAACAAATATACAGGACAACTCCCTTGTGCATGTTGCGAAGT
CTAATCTAAGTGGGAAGGTGCTACCGACTACTATTGGGGACAATGTTACT
GTAGGCCATAGTGCTGTTTTACATGGCTGTACTGTTGAGGACGAGGCCTT
TGTTGGCATGGGAGCAACACTACTTGATGGTGTTGTTGTTGAGAGACATG
GCATGGTTGCTGCTGGATCTCTTGTGAGGCAGAATACCAGGATCCCTTCT
GGAGAGGTATGGGGAGGCAATCCAGCAAAGTTCCTGAGAAAGCTCACTGA
TGAAGAAATAGCCTTTATTTCCCAGTCAGCCACCAATTATTCCAACTTGG
CACAAGTTCATGCAGCTGAGAATGCGAAGTCCTTCGATGAGATTGAATTT
GAGAAAGTTCTTCGCAAGAAGTTTGCACGTCGGGATGAGGAATACGACTC
AATGCTCGGTGTTGTTCGTGAAACTCCTCAAGAAATTATT
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