CF838858
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECO55 (Carnitine operon protein caiE OS=Escherichia coli (strain 55989 / EAEC) GN=caiE PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21 Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 1 Query: 226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ ++ G PA+ +R ++D+E+ + + Y +L A +H + + +E Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECO24 (Carnitine operon protein caiE OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=caiE PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21 Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 1 Query: 226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ ++ G PA+ +R ++D+E+ + + Y +L A +H + + +E Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_SHIFL (Carnitine operon protein caiE OS=Shigella flexneri GN=caiE PE=3 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21 Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 1 Query: 226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ ++ G PA+ +R ++D+E+ + + Y +L A +H + + +E Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_SHIF8 (Carnitine operon protein caiE OS=Shigella flexneri serotype 5b (strain 8401) GN=caiE PE=3 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21 Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 1 Query: 226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ ++ G PA+ +R ++D+E+ + + Y +L A +H + + +E Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_SALPB (Carnitine operon protein caiE OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiE PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21 Identity = 58/159 (36.48%), Postives = 90/159 (56.60%), Query Frame = 1 Query: 226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA 702 P V DAFV PSA +IGDV VG G I LRGD + + +G+N+Q ++H T + +N +GH A+LHGC V +A VGM + ++DG V+ +VAA S V+ + + ++ G+PA+ LR++TD+E+ + + Y +LA Sbjct: 11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQYGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKRLNTKEYQDLA 163
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLC (Carnitine operon protein caiE OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiE PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.454e-21 Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 1 Query: 226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ ++ G PA+ +R ++D+E+ + + Y +L A +H + + +E Sbjct: 11 PIVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLIGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_ESCF3 (Carnitine operon protein caiE OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=caiE PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.123e-21 Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 1 Query: 226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL 699 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ ++ G PA+ +R ++D+E+ + + Y +L Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELRWKHLNTKEYQDL 162
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_SHIDS (Carnitine operon protein caiE OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiE PE=3 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 2.707e-20 Identity = 59/177 (33.33%), Postives = 91/177 (51.41%), Query Frame = 1 Query: 226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 741 P V AFV PSA +IG V VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ ++ G PA+ +R ++D+E+ + + Y +L A +H + + +E Sbjct: 11 PVVHPTAFVHPSAVLIGYVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_CITK8 (Carnitine operon protein caiE OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiE PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.754e-19 Identity = 55/159 (34.59%), Postives = 85/159 (53.46%), Query Frame = 1 Query: 226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA 702 P V +A+V PSA +IGDV VG G I LRGD + + +G N+QD ++H T + +N +GH A+LHGC + +A VGM + ++DG ++ +VAA S V+ ++ G PA+ R +TDEE+ + + Y +LA Sbjct: 11 PVVHPEAYVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGANLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVIGRDALVGMNSVIMDGAIIGEESIVAAMSFVKAGFVGAPRQLLVGAPARVKRDVTDEELHWKRLNTQEYQDLA 163
BLAST of CF838858 vs. ExPASy Swiss-Prot
Match: CAIE_PROSL (Carnitine operon protein caiE OS=Proteus sp. (strain LE138) GN=caiE PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 6.667e-19 Identity = 49/158 (31.01%), Postives = 87/158 (55.06%), Query Frame = 1 Query: 226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL 699 P V A++ PSA +IGDV +G G I LRGD + V +G N+QD ++H + T + +N +GH A+LH C + ++ VGM + ++DG ++ +VAA S V+ + + ++ G+PAK +R ++D+++ + + Y +L Sbjct: 11 PVVHPTAYIHPSAVLIGDVIIGAGVYIGPLASLRGDYGRLIVEAGANLQDGCVMHGYTD------MDTIVQENGHIGHGAILHSCIIGRDSLVGMNSVIMDGAIIGEESIVAAMSFVKAGFQGQARQMLMGSPAKHVRDISDQDMQWKRMNTREYQDL 162 The following BLAST results are available for this feature:
BLAST of CF838858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 51
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838858 ID=CF838858; Name=CF838858; organism=Citrus sinensis; type=EST; length=840bpback to top |