CF838899

Overview
NameCF838899
Unique NameCF838899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1304 contig Csv1_Contig1304:1..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_SYNJB (30S ribosomal protein S9 OS=Synechococcus sp. GN=rpsI PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.598e-35
Identity = 79/125 (63.20%), Postives = 88/125 (70.40%), Query Frame = 2
Query:  338 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            +GTGRRK A+ARV L  GTGK IIN R   +YLQ     L  +K PL  LG E SYD+ V+AHGGG+ GQA AI LGVARAL +V   +R PLK EG L RD R VERKK GL KARKAPQYSKR
Sbjct:   12 WGTGRRKTAVARVRLVPGTGKIIINDRPGDQYLQYQEALLASVKGPLEILGLENSYDILVRAHGGGVHGQADAIKLGVARALCEVDPANRGPLKVEGYLKRDPRAVERKKYGLRKARKAPQYSKR 136          
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_CYAP7 (30S ribosomal protein S9 OS=Cyanothece sp. (strain PCC 7424) GN=rpsI PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.123e-34
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = 2
Query:  338 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            +GTGRRK ++ARV L  GTG+  +N +    Y      +LQ IK PL TLG E  YD+ VKAHGGGL+GQA A+ LGVARAL +++ ++R PLK EG LTRD R  ERKK GLHKARKAPQYSKR
Sbjct:   13 WGTGRRKTSVARVRLIPGTGQVTVNGKPGDTYFNRIADYLQGIKAPLETLGLENEYDILVKAHGGGLTGQADAVKLGVARALCELAPENRQPLKSEGYLTRDPRAKERKKYGLHKARKAPQYSKR 137          
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RR9_MESVI (30S ribosomal protein S9, chloroplastic OS=Mesostigma viride GN=rps9 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.467e-34
Identity = 78/124 (62.90%), Postives = 90/124 (72.58%), Query Frame = 2
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK A+ARV L  G G+ IIN      YLQ N  +L  ++ PL TLG E +YD+ VKA GGGL+GQA+AI LGVARAL  +   +R PLKKEG LTRDSRV ERKK GL KARKAPQ+SKR
Sbjct:   14 GTGRRKSAVARVRLVPGNGEVIINGLPGTNYLQFNGSYLSAVRSPLETLGLEDNYDIIVKAVGGGLTGQAEAIRLGVARALCTIDTSNRHPLKKEGFLTRDSRVKERKKYGLKKARKAPQFSKR 137          
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_SYNY3 (30S ribosomal protein S9 OS=Synechocystis sp. (strain PCC 6803) GN=rpsI PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.278e-34
Identity = 74/125 (59.20%), Postives = 90/125 (72.00%), Query Frame = 2
Query:  338 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            +GTGRRK AIARV L  G G+ I+N +  + Y      ++Q +K PL TLG E  Y++ V AHGGGL+GQA A+ LGVARAL ++S ++R PLK EG LTRD R  ERKK GLHKARKAPQYSKR
Sbjct:   13 WGTGRRKAAIARVRLVPGQGEVIVNGKPGEIYFNRIANYIQSLKAPLETLGLEGEYNILVNAHGGGLTGQADAVKLGVARALCQLSPENRQPLKAEGYLTRDPRAKERKKYGLHKARKAPQYSKR 137          
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_CYAP4 (30S ribosomal protein S9 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpsI PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.241e-33
Identity = 74/127 (58.27%), Postives = 88/127 (69.29%), Query Frame = 2
Query:  332 TIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            T  GTGRRK ++ARV L  GTG+  IN +  + YLQ NP +L   K PL +LG E  YD+ V   GGGL+GQA +I LGVARAL ++  ++R PLK EG LTRD R  ERKK GL KARKAPQYSKR
Sbjct:   11 TYIGTGRRKSSVARVRLVPGTGQLTINGKSGELYLQFNPTYLAIAKAPLESLGLENDYDILVNTSGGGLTGQADSIRLGVARALCQLDPENRKPLKVEGYLTRDPRAKERKKYGLRKARKAPQYSKR 137          
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_PROM4 (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain MIT 9211) GN=rpsI PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.047e-33
Identity = 74/125 (59.20%), Postives = 87/125 (69.60%), Query Frame = 2
Query:  338 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            +GTGRRK ++ARV L  GTGK  IN R    YL  NP +L  +K PL TLG   SYDV V  +GGGL+GQA AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ+SKR
Sbjct:   13 WGTGRRKTSVARVRLIPGTGKITINGRPGDHYLNFNPAYLAAVKAPLQTLGLSDSYDVLVNVYGGGLTGQADAIKQGAARALCELSADNRKPLKIEGHLSRDPRAKERRKYGLKKARKAPQFSKR 137          
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RR9_GRATL (30S ribosomal protein S9, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rps9 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.047e-33
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 2
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK +IARV L  G+GK IIN    + YLQ +P +L+    PL  LG    YD++VK  GGGL+GQA AI LG+ARAL +++ D+R+ LK EG LTRD+R+ ERKK GL KARKAPQYSKR
Sbjct:   14 GTGRRKTSIARVKLVPGSGKLIINGLPGESYLQFSPNYLRVSYSPLKILGLNKEYDIYVKTEGGGLTGQANAIRLGLARALCRMNPDNRTTLKAEGFLTRDARIKERKKYGLRKARKAPQYSKR 137          
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_PROM9 (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpsI PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.051e-32
Identity = 74/125 (59.20%), Postives = 87/125 (69.60%), Query Frame = 2
Query:  338 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            +GTGRRK ++ARV L  G G+  IN R   +YL  NPL L  IK PL TLG E SYD+ V   GGGL+GQA AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ+SKR
Sbjct:   12 WGTGRRKTSVARVRLIPGNGQIKINGRSGDDYLNFNPLHLNSIKAPLQTLGLENSYDILVNVFGGGLTGQADAIKQGAARALCELSPDNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQFSKR 136          
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_PROM3 (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain MIT 9303) GN=rpsI PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.051e-32
Identity = 73/125 (58.40%), Postives = 85/125 (68.00%), Query Frame = 2
Query:  338 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            +GTGRRK ++ARV L  GTG   IN R    YL  NP +L  +K PL TLG    YDV V  HGGGL+GQA AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ+SKR
Sbjct:   11 WGTGRRKTSVARVRLVPGTGTITINGRPGDHYLNFNPAYLAAVKAPLQTLGLNEQYDVLVNVHGGGLTGQADAIKQGAARALCELSADNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQFSKR 135          
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_PROM2 (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpsI PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.793e-32
Identity = 73/125 (58.40%), Postives = 86/125 (68.80%), Query Frame = 2
Query:  338 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            +GTGRRK ++ARV L  G G   IN R   +YL  NPL L  +K PL TLG E SYD+ V   GGGL+GQA AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ+SKR
Sbjct:   12 WGTGRRKTSVARVRLIPGNGLITINGRSGDDYLNFNPLHLNSVKAPLQTLGLENSYDILVNVFGGGLTGQADAIKQGAARALCELSPDNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQFSKR 136          
The following BLAST results are available for this feature:
BLAST of CF838899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_SYNJB8.598e-3563.2030S ribosomal protein S9 OS=Synechococcus sp. GN=r... [more]
RS9_CYAP71.123e-3460.0030S ribosomal protein S9 OS=Cyanothece sp. (strain... [more]
RR9_MESVI1.467e-3462.9030S ribosomal protein S9, chloroplastic OS=Mesosti... [more]
RS9_SYNY37.278e-3459.2030S ribosomal protein S9 OS=Synechocystis sp. (str... [more]
RS9_CYAP41.241e-3358.2730S ribosomal protein S9 OS=Cyanothece sp. (strain... [more]
RS9_PROM48.047e-3359.2030S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RR9_GRATL8.047e-3358.8730S ribosomal protein S9, chloroplastic OS=Gracila... [more]
RS9_PROM91.051e-3259.2030S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RS9_PROM31.051e-3258.4030S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RS9_PROM21.793e-3258.4030S ribosomal protein S9 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838899 ID=CF838899; Name=CF838899; organism=Citrus sinensis; type=EST; length=834bp
CACGACGGTAGAAAAGGAGTTGACATACCAAATATGATTATGTAAGGCAT
AGGTGTCTTCATGGGATTCTCCCCTTCCTTTTCTCCTGCCACCCGCAATA
TCTCCTCTCACATCTTCCCTCTCTTCCCTTTCATTTTCCTCCCAAATTTC
TCAGAAACCAGGCATCCCCTTTGTCTCATTACACAGGTCCAAATCGATAT
CCATCTCTCCAAAAAATGATAAAACCCCAAAACTGGTAGTATCGGCCACA
GAAGCTGCGCCAGCTGAACTGGAAACAACTGACCTCAAGAAATACGTCAA
ATCGAGGCTTCCCGGTGGCTTTGCGGCTCAAACTATTTTTGGAACGGGCC
GTCGGAAATGCGCCATTGCTCGTGTCGTCCTCCAAGAAGGCACCGGCAAA
TTCATCATCAACTACCGCGATGCCAAGGAATATCTTCAAGGCAATCCACT
ATGGCTACAGTATATAAAAGTCCCTTTGGTAACTTTGGGTTATGAAACTA
GCTATGATGTTTTTGTGAAAGCTCATGGTGGCGGCCTCTCTGGTCAAGCT
CAAGCAATAACACTCGGCGTTGCTCGTGCATTGTTGAAGGTGAGCCAGGA
CCATAGATCCCCTCTGAAAAAGGAAGGCCTTCTGACCAGAGATTCCAGAG
TAGTAGAGAGGAAAAAAGCTGGACTCCATAAAGCCCGGAAAGCCCCACAA
TATTCCAAACGTTGAGGCCAGAATTACAGTGTGATGGACTGTTACCTGTA
GATCTATTTTCTGCTTGTATCTCTGAACAATTTTTTTTTGGTTTAACATT
TTATGTTTGGAGTTTTGTACTTCAAAAAAAAAAA
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