CF838899

Overview
NameCF838899
Unique NameCF838899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_CLOPE (30S ribosomal protein S9 OS=Clostridium perfringens GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.618e-27
Identity = 66/124 (53.23%), Postives = 83/124 (66.94%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK ++ARV L  G G+ I+N R+ + Y     L +  +  PLV    +  YDV V  HGGGLSGQA AI  G++RALLK  ++ R  LKK G LTRD R+VERKK GL KAR++PQ+SKR
Sbjct:    8 GTGRRKKSVARVRLVPGEGRVIVNNREIETYFGLETLRV-VVNQPLVLTETKDKYDVLVNVHGGGLSGQAGAIRHGISRALLKADENLRPELKKAGFLTRDPRMVERKKCGLKKARRSPQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_CLOP1 (30S ribosomal protein S9 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.618e-27
Identity = 66/124 (53.23%), Postives = 83/124 (66.94%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK ++ARV L  G G+ I+N R+ + Y     L +  +  PLV    +  YDV V  HGGGLSGQA AI  G++RALLK  ++ R  LKK G LTRD R+VERKK GL KAR++PQ+SKR
Sbjct:    8 GTGRRKKSVARVRLVPGEGRVIVNNREIETYFGLETLRV-VVNQPLVLTETKDKYDVLVNVHGGGLSGQAGAIRHGISRALLKADENLRPELKKAGFLTRDPRMVERKKCGLKKARRSPQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_CLOBM (30S ribosomal protein S9 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.618e-27
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  338 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            FGTGRRK ++ARV L  G GK IIN RD + Y     L +  +  PLV    +  YDV V  HGGG +GQA A+  G++RAL+K  ++ +S LKK G LTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    7 FGTGRRKKSVARVRLVAGDGKVIINNRDIENYFPIETLRV-IVNQPLVLTETKDKYDVLVNVHGGGFTGQAGAVRHGISRALVKADENMKSSLKKAGFLTRDPRMKERKKYGLKKARRSPQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_CLOBL (30S ribosomal protein S9 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.618e-27
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  338 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            FGTGRRK ++ARV L  G GK IIN RD + Y     L +  +  PLV    +  YDV V  HGGG +GQA A+  G++RAL+K  ++ +S LKK G LTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    7 FGTGRRKKSVARVRLVAGDGKVIINNRDIENYFPIETLRV-IVNQPLVLTETKDKYDVLVNVHGGGFTGQAGAVRHGISRALVKADENMKSSLKKAGFLTRDPRMKERKKYGLKKARRSPQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_CLOBK (30S ribosomal protein S9 OS=Clostridium botulinum (strain Okra / Type B1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.618e-27
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  338 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            FGTGRRK ++ARV L  G GK IIN RD + Y     L +  +  PLV    +  YDV V  HGGG +GQA A+  G++RAL+K  ++ +S LKK G LTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    7 FGTGRRKKSVARVRLVAGDGKVIINNRDIENYFPIETLRV-IVNQPLVLTETKDKYDVLVNVHGGGFTGQAGAVRHGISRALVKADENMKSSLKKAGFLTRDPRMKERKKYGLKKARRSPQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_CLOBJ (30S ribosomal protein S9 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.618e-27
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  338 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            FGTGRRK ++ARV L  G GK IIN RD + Y     L +  +  PLV    +  YDV V  HGGG +GQA A+  G++RAL+K  ++ +S LKK G LTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    7 FGTGRRKKSVARVRLVAGDGKVIINNRDIENYFPIETLRV-IVNQPLVLTETKDKYDVLVNVHGGGFTGQAGAVRHGISRALVKADENMKSSLKKAGFLTRDPRMKERKKYGLKKARRSPQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_CLOBH (30S ribosomal protein S9 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.618e-27
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  338 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            FGTGRRK ++ARV L  G GK IIN RD + Y     L +  +  PLV    +  YDV V  HGGG +GQA A+  G++RAL+K  ++ +S LKK G LTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    7 FGTGRRKKSVARVRLVAGDGKVIINNRDIENYFPIETLRV-IVNQPLVLTETKDKYDVLVNVHGGGFTGQAGAVRHGISRALVKADENMKSSLKKAGFLTRDPRMKERKKYGLKKARRSPQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_CLOB6 (30S ribosomal protein S9 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.618e-27
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  338 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            FGTGRRK ++ARV L  G GK IIN RD + Y     L +  +  PLV    +  YDV V  HGGG +GQA A+  G++RAL+K  ++ +S LKK G LTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    7 FGTGRRKKSVARVRLVAGDGKVIINNRDIENYFPIETLRV-IVNQPLVLTETKDKYDVLVNVHGGGFTGQAGAVRHGISRALVKADENMKSSLKKAGFLTRDPRMKERKKYGLKKARRSPQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_CLOB1 (30S ribosomal protein S9 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.618e-27
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  338 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            FGTGRRK ++ARV L  G GK IIN RD + Y     L +  +  PLV    +  YDV V  HGGG +GQA A+  G++RAL+K  ++ +S LKK G LTRD R+ ERKK GL KAR++PQ+SKR
Sbjct:    7 FGTGRRKKSVARVRLVAGDGKVIINNRDIENYFPIETLRV-IVNQPLVLTETKDKYDVLVNVHGGGFTGQAGAVRHGISRALVKADENMKSSLKKAGFLTRDPRMKERKKYGLKKARRSPQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_STRGG (30S ribosomal protein S9 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.125e-26
Identity = 73/143 (51.05%), Postives = 89/143 (62.24%), Query Frame = 2 
Query:  290 KYVKSRLPGGFA-AQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDH-RSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            +Y    L G F   Q   G GRRK AIARV +  GTGK+ IN R  ++Y   N +  Q +  P   L  +  YDV  +  GGG+SGQA A+ LGVAR+L +   D+ R+ LKK G L+RD R VERKKAGL KARKAPQYSKR
Sbjct:   34 EYTSESLAGRFGDPQPAAGLGRRKNAIARVRIVPGTGKWKINGRTLEDYFP-NKVHQQEVNEPFKVLELDGRYDVIARISGGGVSGQAGALRLGVARSLNEADVDNNRATLKKAGFLSRDDRAVERKKAGLKKARKAPQYSKR 175
The following BLAST results are available for this feature:
BLAST of CF838899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_CLOPE8.618e-2753.2330S ribosomal protein S9 OS=Clostridium perfringen... [more]
RS9_CLOP18.618e-2753.2330S ribosomal protein S9 OS=Clostridium perfringen... [more]
RS9_CLOBM8.618e-2752.0030S ribosomal protein S9 OS=Clostridium botulinum ... [more]
RS9_CLOBL8.618e-2752.0030S ribosomal protein S9 OS=Clostridium botulinum ... [more]
RS9_CLOBK8.618e-2752.0030S ribosomal protein S9 OS=Clostridium botulinum ... [more]
RS9_CLOBJ8.618e-2752.0030S ribosomal protein S9 OS=Clostridium botulinum ... [more]
RS9_CLOBH8.618e-2752.0030S ribosomal protein S9 OS=Clostridium botulinum ... [more]
RS9_CLOB68.618e-2752.0030S ribosomal protein S9 OS=Clostridium botulinum ... [more]
RS9_CLOB18.618e-2752.0030S ribosomal protein S9 OS=Clostridium botulinum ... [more]
RS9_STRGG1.125e-2651.0530S ribosomal protein S9 OS=Streptomyces griseus s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06O19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838899 ID=CF838899; Name=CF838899; organism=Citrus sinensis; type=EST; length=834bp
CACGACGGTAGAAAAGGAGTTGACATACCAAATATGATTATGTAAGGCAT
AGGTGTCTTCATGGGATTCTCCCCTTCCTTTTCTCCTGCCACCCGCAATA
TCTCCTCTCACATCTTCCCTCTCTTCCCTTTCATTTTCCTCCCAAATTTC
TCAGAAACCAGGCATCCCCTTTGTCTCATTACACAGGTCCAAATCGATAT
CCATCTCTCCAAAAAATGATAAAACCCCAAAACTGGTAGTATCGGCCACA
GAAGCTGCGCCAGCTGAACTGGAAACAACTGACCTCAAGAAATACGTCAA
ATCGAGGCTTCCCGGTGGCTTTGCGGCTCAAACTATTTTTGGAACGGGCC
GTCGGAAATGCGCCATTGCTCGTGTCGTCCTCCAAGAAGGCACCGGCAAA
TTCATCATCAACTACCGCGATGCCAAGGAATATCTTCAAGGCAATCCACT
ATGGCTACAGTATATAAAAGTCCCTTTGGTAACTTTGGGTTATGAAACTA
GCTATGATGTTTTTGTGAAAGCTCATGGTGGCGGCCTCTCTGGTCAAGCT
CAAGCAATAACACTCGGCGTTGCTCGTGCATTGTTGAAGGTGAGCCAGGA
CCATAGATCCCCTCTGAAAAAGGAAGGCCTTCTGACCAGAGATTCCAGAG
TAGTAGAGAGGAAAAAAGCTGGACTCCATAAAGCCCGGAAAGCCCCACAA
TATTCCAAACGTTGAGGCCAGAATTACAGTGTGATGGACTGTTACCTGTA
GATCTATTTTCTGCTTGTATCTCTGAACAATTTTTTTTTGGTTTAACATT
TTATGTTTGGAGTTTTGTACTTCAAAAAAAAAAA
back to top