CF838899

Overview
NameCF838899
Unique NameCF838899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_STAAR (30S ribosomal protein S9 OS=Staphylococcus aureus (strain MRSA252) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.507e-26
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK ++ARV L  G G   +N RD +EYL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL  AR++PQ+SKR
Sbjct:    8 GTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_STAAN (30S ribosomal protein S9 OS=Staphylococcus aureus (strain N315) GN=rpsI PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.507e-26
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK ++ARV L  G G   +N RD +EYL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL  AR++PQ+SKR
Sbjct:    8 GTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_STAAM (30S ribosomal protein S9 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsI PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.507e-26
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK ++ARV L  G G   +N RD +EYL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL  AR++PQ+SKR
Sbjct:    8 GTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_STAAE (30S ribosomal protein S9 OS=Staphylococcus aureus (strain Newman) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.507e-26
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK ++ARV L  G G   +N RD +EYL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL  AR++PQ+SKR
Sbjct:    8 GTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_STAAC (30S ribosomal protein S9 OS=Staphylococcus aureus (strain COL) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.507e-26
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK ++ARV L  G G   +N RD +EYL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL  AR++PQ+SKR
Sbjct:   10 GTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR 132
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_STAAB (30S ribosomal protein S9 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.507e-26
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK ++ARV L  G G   +N RD +EYL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL  AR++PQ+SKR
Sbjct:   10 GTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR 132
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_STAA9 (30S ribosomal protein S9 OS=Staphylococcus aureus (strain JH9) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.507e-26
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK ++ARV L  G G   +N RD +EYL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL  AR++PQ+SKR
Sbjct:    8 GTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_STAA8 (30S ribosomal protein S9 OS=Staphylococcus aureus (strain NCTC 8325) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.507e-26
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK ++ARV L  G G   +N RD +EYL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL  AR++PQ+SKR
Sbjct:   10 GTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR 132
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_STAA3 (30S ribosomal protein S9 OS=Staphylococcus aureus (strain USA300) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.507e-26
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK ++ARV L  G G   +N RD +EYL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL  AR++PQ+SKR
Sbjct:   10 GTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR 132
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_STAA2 (30S ribosomal protein S9 OS=Staphylococcus aureus (strain JH1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.507e-26
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK ++ARV L  G G   +N RD +EYL    L L  +  P      + +YDV V  HGGG +GQAQAI  G+ARALL+   ++R  LK+ GLLTRD R+ ERKK GL  AR++PQ+SKR
Sbjct:    8 GTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILD-LNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR 130
The following BLAST results are available for this feature:
BLAST of CF838899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_STAAR2.507e-2651.6130S ribosomal protein S9 OS=Staphylococcus aureus ... [more]
RS9_STAAN2.507e-2651.6130S ribosomal protein S9 OS=Staphylococcus aureus ... [more]
RS9_STAAM2.507e-2651.6130S ribosomal protein S9 OS=Staphylococcus aureus ... [more]
RS9_STAAE2.507e-2651.6130S ribosomal protein S9 OS=Staphylococcus aureus ... [more]
RS9_STAAC2.507e-2651.6130S ribosomal protein S9 OS=Staphylococcus aureus ... [more]
RS9_STAAB2.507e-2651.6130S ribosomal protein S9 OS=Staphylococcus aureus ... [more]
RS9_STAA92.507e-2651.6130S ribosomal protein S9 OS=Staphylococcus aureus ... [more]
RS9_STAA82.507e-2651.6130S ribosomal protein S9 OS=Staphylococcus aureus ... [more]
RS9_STAA32.507e-2651.6130S ribosomal protein S9 OS=Staphylococcus aureus ... [more]
RS9_STAA22.507e-2651.6130S ribosomal protein S9 OS=Staphylococcus aureus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06O19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838899 ID=CF838899; Name=CF838899; organism=Citrus sinensis; type=EST; length=834bp
CACGACGGTAGAAAAGGAGTTGACATACCAAATATGATTATGTAAGGCAT
AGGTGTCTTCATGGGATTCTCCCCTTCCTTTTCTCCTGCCACCCGCAATA
TCTCCTCTCACATCTTCCCTCTCTTCCCTTTCATTTTCCTCCCAAATTTC
TCAGAAACCAGGCATCCCCTTTGTCTCATTACACAGGTCCAAATCGATAT
CCATCTCTCCAAAAAATGATAAAACCCCAAAACTGGTAGTATCGGCCACA
GAAGCTGCGCCAGCTGAACTGGAAACAACTGACCTCAAGAAATACGTCAA
ATCGAGGCTTCCCGGTGGCTTTGCGGCTCAAACTATTTTTGGAACGGGCC
GTCGGAAATGCGCCATTGCTCGTGTCGTCCTCCAAGAAGGCACCGGCAAA
TTCATCATCAACTACCGCGATGCCAAGGAATATCTTCAAGGCAATCCACT
ATGGCTACAGTATATAAAAGTCCCTTTGGTAACTTTGGGTTATGAAACTA
GCTATGATGTTTTTGTGAAAGCTCATGGTGGCGGCCTCTCTGGTCAAGCT
CAAGCAATAACACTCGGCGTTGCTCGTGCATTGTTGAAGGTGAGCCAGGA
CCATAGATCCCCTCTGAAAAAGGAAGGCCTTCTGACCAGAGATTCCAGAG
TAGTAGAGAGGAAAAAAGCTGGACTCCATAAAGCCCGGAAAGCCCCACAA
TATTCCAAACGTTGAGGCCAGAATTACAGTGTGATGGACTGTTACCTGTA
GATCTATTTTCTGCTTGTATCTCTGAACAATTTTTTTTTGGTTTAACATT
TTATGTTTGGAGTTTTGTACTTCAAAAAAAAAAA
back to top