CF838899

Overview
NameCF838899
Unique NameCF838899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1304 contig Csv1_Contig1304:1..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_STRA3 (30S ribosomal protein S9 OS=Streptococcus agalactiae serotype III GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.499e-28
Identity = 70/124 (56.45%), Postives = 84/124 (67.74%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK A+ARV L  GTGK  IN +D +EY+    L L  I  P      + SYDVFV   GGG +GQ+ AI  G++RALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITINKKDVEEYIPHADLRL-VINQPFAVTSTQGSYDVFVNVVGGGYAGQSGAIRHGISRALLEVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_STRA1 (30S ribosomal protein S9 OS=Streptococcus agalactiae serotype Ia GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.499e-28
Identity = 70/124 (56.45%), Postives = 84/124 (67.74%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK A+ARV L  GTGK  IN +D +EY+    L L  I  P      + SYDVFV   GGG +GQ+ AI  G++RALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITINKKDVEEYIPHADLRL-VINQPFAVTSTQGSYDVFVNVVGGGYAGQSGAIRHGISRALLEVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_MYCTU (30S ribosomal protein S9 OS=Mycobacterium tuberculosis GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.499e-28
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = 2 
Query:  347 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GRRK A+ RV L  GTGKF +N R  ++Y   N +  Q IK PLVT+    S+D+F    GGG SGQA A+ LG+ARAL+ VS + R  LKK G LTRD R  ERKK GL KARKAPQYSKR
Sbjct:   31 GRRKEAVVRVRLVPGTGKFDLNGRSLEDYFP-NKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR 151
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_MYCTA (30S ribosomal protein S9 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.499e-28
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = 2 
Query:  347 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GRRK A+ RV L  GTGKF +N R  ++Y   N +  Q IK PLVT+    S+D+F    GGG SGQA A+ LG+ARAL+ VS + R  LKK G LTRD R  ERKK GL KARKAPQYSKR
Sbjct:   31 GRRKEAVVRVRLVPGTGKFDLNGRSLEDYFP-NKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR 151
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_MYCBT (30S ribosomal protein S9 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.499e-28
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = 2 
Query:  347 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GRRK A+ RV L  GTGKF +N R  ++Y   N +  Q IK PLVT+    S+D+F    GGG SGQA A+ LG+ARAL+ VS + R  LKK G LTRD R  ERKK GL KARKAPQYSKR
Sbjct:   31 GRRKEAVVRVRLVPGTGKFDLNGRSLEDYFP-NKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR 151
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_MYCBP (30S ribosomal protein S9 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.499e-28
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = 2 
Query:  347 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GRRK A+ RV L  GTGKF +N R  ++Y   N +  Q IK PLVT+    S+D+F    GGG SGQA A+ LG+ARAL+ VS + R  LKK G LTRD R  ERKK GL KARKAPQYSKR
Sbjct:   31 GRRKEAVVRVRLVPGTGKFDLNGRSLEDYFP-NKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR 151
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_MYCBO (30S ribosomal protein S9 OS=Mycobacterium bovis GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.499e-28
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = 2 
Query:  347 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GRRK A+ RV L  GTGKF +N R  ++Y   N +  Q IK PLVT+    S+D+F    GGG SGQA A+ LG+ARAL+ VS + R  LKK G LTRD R  ERKK GL KARKAPQYSKR
Sbjct:   31 GRRKEAVVRVRLVPGTGKFDLNGRSLEDYFP-NKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR 151
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_LACLS (30S ribosomal protein S9 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.499e-28
Identity = 70/124 (56.45%), Postives = 84/124 (67.74%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK A+ARV L  GTGK  +N R+ + Y+    + L  I  P      E SYD  V  +GGG+SGQA AI  G+ARALL+V  D RS LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNGREVESYIPHADMRL-VINQPFAATQTEGSYDTLVNVNGGGVSGQAGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_LACLM (30S ribosomal protein S9 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.499e-28
Identity = 70/124 (56.45%), Postives = 84/124 (67.74%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK A+ARV L  GTGK  +N R+ + Y+    + L  I  P      E SYD  V  +GGG+SGQA AI  G+ARALL+V  D RS LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNGREVESYIPHADMRL-VINQPFAATQTEGSYDTLVNVNGGGVSGQAGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of CF838899 vs. ExPASy Swiss-Prot
Match: RS9_LACLA (30S ribosomal protein S9 OS=Lactococcus lactis subsp. lactis GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.499e-28
Identity = 70/124 (56.45%), Postives = 84/124 (67.74%), Query Frame = 2 
Query:  341 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 712
            GTGRRK A+ARV L  GTGK  +N R+ + Y+    + L  I  P      E SYD  V  +GGG+SGQA AI  G+ARALL+V  D RS LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNGREVESYIPHADMRL-VINQPFAATQTEGSYDTLVNVNGGGVSGQAGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
The following BLAST results are available for this feature:
BLAST of CF838899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_STRA33.499e-2856.4530S ribosomal protein S9 OS=Streptococcus agalacti... [more]
RS9_STRA13.499e-2856.4530S ribosomal protein S9 OS=Streptococcus agalacti... [more]
RS9_MYCTU3.499e-2857.3830S ribosomal protein S9 OS=Mycobacterium tubercul... [more]
RS9_MYCTA3.499e-2857.3830S ribosomal protein S9 OS=Mycobacterium tubercul... [more]
RS9_MYCBT3.499e-2857.3830S ribosomal protein S9 OS=Mycobacterium bovis (s... [more]
RS9_MYCBP3.499e-2857.3830S ribosomal protein S9 OS=Mycobacterium bovis (s... [more]
RS9_MYCBO3.499e-2857.3830S ribosomal protein S9 OS=Mycobacterium bovis GN... [more]
RS9_LACLS3.499e-2856.4530S ribosomal protein S9 OS=Lactococcus lactis sub... [more]
RS9_LACLM3.499e-2856.4530S ribosomal protein S9 OS=Lactococcus lactis sub... [more]
RS9_LACLA3.499e-2856.4530S ribosomal protein S9 OS=Lactococcus lactis sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838899 ID=CF838899; Name=CF838899; organism=Citrus sinensis; type=EST; length=834bp
CACGACGGTAGAAAAGGAGTTGACATACCAAATATGATTATGTAAGGCAT
AGGTGTCTTCATGGGATTCTCCCCTTCCTTTTCTCCTGCCACCCGCAATA
TCTCCTCTCACATCTTCCCTCTCTTCCCTTTCATTTTCCTCCCAAATTTC
TCAGAAACCAGGCATCCCCTTTGTCTCATTACACAGGTCCAAATCGATAT
CCATCTCTCCAAAAAATGATAAAACCCCAAAACTGGTAGTATCGGCCACA
GAAGCTGCGCCAGCTGAACTGGAAACAACTGACCTCAAGAAATACGTCAA
ATCGAGGCTTCCCGGTGGCTTTGCGGCTCAAACTATTTTTGGAACGGGCC
GTCGGAAATGCGCCATTGCTCGTGTCGTCCTCCAAGAAGGCACCGGCAAA
TTCATCATCAACTACCGCGATGCCAAGGAATATCTTCAAGGCAATCCACT
ATGGCTACAGTATATAAAAGTCCCTTTGGTAACTTTGGGTTATGAAACTA
GCTATGATGTTTTTGTGAAAGCTCATGGTGGCGGCCTCTCTGGTCAAGCT
CAAGCAATAACACTCGGCGTTGCTCGTGCATTGTTGAAGGTGAGCCAGGA
CCATAGATCCCCTCTGAAAAAGGAAGGCCTTCTGACCAGAGATTCCAGAG
TAGTAGAGAGGAAAAAAGCTGGACTCCATAAAGCCCGGAAAGCCCCACAA
TATTCCAAACGTTGAGGCCAGAATTACAGTGTGATGGACTGTTACCTGTA
GATCTATTTTCTGCTTGTATCTCTGAACAATTTTTTTTTGGTTTAACATT
TTATGTTTGGAGTTTTGTACTTCAAAAAAAAAAA
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