CF838900

Overview
NameCF838900
Unique NameCF838900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:818..1640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 8.612e-80
Identity = 144/190 (75.79%), Postives = 170/190 (89.47%), Query Frame = 3
Query:  123 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            ++KLF RW  +D+ ++DISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLT+ LMM GR+NGKKL+A RIVKHA EIIHLLT +NP+QV V+A++NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRNIKT+AECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   42 EIKLFGRWACDDISISDISLQDYIAVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS5_CAEEL (40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.918e-79
Identity = 147/190 (77.37%), Postives = 170/190 (89.47%), Query Frame = 3
Query:  123 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            +V LF +W+ + V V+DISL DYI V+  K A Y+PH+AGR+ V+RFRKA CPIVERL NSLMMHGRNNGKKLM VRIVKHA EII+LLT +NP+QV+V+AVINSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+LL TGARE+AFRN+KTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   22 EVALFGKWSLQSVNVSDISLVDYIPVKE-KSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.770e-78
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 3
Query:  231 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            HTAGRY  KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTD NPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV+QAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 HTAGRYQAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVSQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 154          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3)

HSP 1 Score: 285.804 bits (730), Expect = 1.985e-76
Identity = 140/190 (73.68%), Postives = 166/190 (87.37%), Query Frame = 3
Query:  123 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            ++KLFN+W+FE+V+V D SL DY+ V   +   +V HTAGRY+ KRFRKAQCPI+ERLTNSLMM+GRNNGKKL AVRI+KH ++II++LTDQNPIQV+VDA+ N+GPRED TR+G  G  RRQAVD+SPLRRVNQAI LLT GARE+AFRNIKTIAE LA+ELINAAKGSS SYAIKKKDE+ERVAK+NR
Sbjct:   39 EIKLFNKWSFEEVEVKDASLVDYVQV---RQPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 225          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.407e-74
Identity = 141/192 (73.44%), Postives = 166/192 (86.46%), Query Frame = 3
Query:  117 TYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            T  +KLFN++ FE V+V DISL DYI +   +    +PHTAGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E+INAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   15 TGHIKLFNKFPFEGVEVKDISLVDYITIGNGQP---LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 7.061e-74
Identity = 140/189 (74.07%), Postives = 165/189 (87.30%), Query Frame = 3
Query:  126 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            +KLFN++ FE V+V DISL DYI +   +    +PHTAGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E+INAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   18 IKLFNKFPFEGVEVKDISLVDYITIGNGQP---LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.626e-70
Identity = 130/193 (67.36%), Postives = 161/193 (83.42%), Query Frame = 3
Query:  114 LTYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            +T +V LF +W++  V   DISL DYI V   K   + PH+AGRY+  RFRKAQCPIVERL NS+MM GRN GKK+MAVRI++ A EII+LLTD+NP+QV+V+AV+NSGPRED+TRIGSAG VRRQAVD+SP+RRVN A+YLLT G R +AFRNI+T+AECLADELINA+KGS NSY+IK+KD +ER AK++R
Sbjct:    1 MTSEVALFGKWSYSGVTCPDISLQDYICV---KKNVFTPHSAGRYNKVRFRKAQCPIVERLANSMMMFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALERTAKSHR 190          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.192e-50
Identity = 92/147 (62.59%), Postives = 123/147 (83.67%), Query Frame = 3
Query:  252 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            +K FRK QCPIVERL   +M HG+N+GKKL+A+R+V+ + EIIHLLT++NPIQV+VDA+IN+ PRED+TR+G+ G VR QAVD+SPLRR+N A+YLL  G R  AFRN K++AECLADE++NA+K  + S+AI KK+++ERVA +NR
Sbjct:    2 IKPFRKIQCPIVERLVCCMMQHGKNSGKKLLAMRVVEESFEIIHLLTEKNPIQVLVDAIINASPREDSTRVGTGGNVRGQAVDVSPLRRINHALYLLIMGCRCGAFRNSKSLAECLADEIVNASKSYTGSFAIMKKEDLERVANSNR 148          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 3.303e-47
Identity = 96/189 (50.79%), Postives = 132/189 (69.84%), Query Frame = 3
Query:  126 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            ++LF +W++  V+V D SL  YI ++      ++PHT GR+  +RF KA+ PIVERL N LM  GRN GKK +A  IVK A +II+  T +NPIQV+V A+ NS PRED T+I   G+  R +VD++P RRV+QA+  +  GAR+ AF N K I ECLA+ELI AA+G   SYAI++K+EIER+A ++R
Sbjct:   21 IRLFGKWSWVGVEVRDPSLKRYINLKPV----WLPHTGGRHEKRRFGKAEVPIVERLMNKLMRPGRNGGKKHLAYNIVKTAFDIIYFETGENPIQVLVKAIENSAPREDTTKITYGGITYRVSVDVAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEELILAARGDPRSYAIRQKEEIERIALSSR 205          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.141e-46
Identity = 94/190 (49.47%), Postives = 134/190 (70.53%), Query Frame = 3
Query:  123 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            ++ LF ++++E+V+VN++SL  YI +        VPH A   +     KA+ PI ER   SLM HGRN+GKK +A+ I + A  IIH +T +NP+QV+VDA++NSGPRED  RIG AG +RR +VD+SPL+R++ AI  L+ G R ++FRN  T+AE +A+ELI A+  S NSYA+ KK EIER+A++NR
Sbjct:   22 EINLFEKYSYEEVKVNNVSLRPYINLS---RRGIVPHAATTITKGTTGKARIPIAERFVCSLMRHGRNSGKKRLAINIFEDACFIIHSMTKKNPLQVLVDAIVNSGPREDTARIGRAGSMRRTSVDVSPLKRISIAISNLSAGIRNASFRNRITLAEAIANELIAASTNSQNSYAVNKKKEIERIAQSNR 208          
The following BLAST results are available for this feature:
BLAST of CF838900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS5B_DROME8.612e-8075.7940S ribosomal protein S5b OS=Drosophila melanogast... [more]
RS5_CAEEL1.918e-7977.3740S ribosomal protein S5 OS=Caenorhabditis elegans... [more]
RS5_NICPL2.770e-7897.4040S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS5_YEAST1.985e-7673.6840S ribosomal protein S5 OS=Saccharomyces cerevisi... [more]
RS5B_SCHPO5.407e-7473.4440S ribosomal protein S5-B OS=Schizosaccharomyces ... [more]
RS5A_SCHPO7.061e-7474.0740S ribosomal protein S5-A OS=Schizosaccharomyces ... [more]
RS5_DICDI3.626e-7067.3640S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS5_ENTHI3.192e-5062.5940S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]
RS7_AERPE3.303e-4750.7930S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]
RS5_ENCCU2.141e-4649.4740S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838900 ID=CF838900; Name=CF838900; organism=Citrus sinensis; type=EST; length=824bp
CGAGCGGCAGCCGTTTCTTATTATTTTATCTCTCTCGCTCTCTCACTCTC
TCATAGCTCTTCATGTAAGAATGGCGACTGCTGTAATGGCACAATCTCAA
GACCCATCACAGCCTCACATACGATGTGAAGCTCTTCAATAGGTGGACTT
TCGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCGTG
CAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTACTC
AGTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTACGA
ACTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCTGTC
AGGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACCGACCAGAA
CCCAATTCAAGTCATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAG
ATGCTACCCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGAT
ATTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATCTACTCACCACTGG
TGCTCGTGAATCTGCTTTTCGTAACATCAAGACTATTGCCGAATGCTTGG
CCGATGAACTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCGATC
AAGAAGAAGGATGAGATTGAGAGAGTGGCAAAGGCCAATCGCTGAGGACG
TGATAGTGGAGAAGCAGATGCAGAAAGTTGTACTTTTAAAAAAAAAAAAA
ACTTTTGGACGATGTTTTGTTGCTATTTTATGAATGTTGTTTCAAGTTTT
GAGTACATGATATTGAGGATGCAT
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