CF838900

Overview
NameCF838900
Unique NameCF838900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:818..1640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_METMP (30S ribosomal protein S7P OS=Methanococcus maripaludis GN=rps7p PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.449e-42
Identity = 96/191 (50.26%), Postives = 125/191 (65.45%), Query Frame = 3
Query:  123 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 692
            ++KLF +W  E V V D SL  YI V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA ESA +N KT+A+CLADELI A+K     S+A+KKK+E ERVA++ R
Sbjct:    2 EIKLFGKWDSETVAVKDPSLKSYISVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASESAHKNKKTVAQCLADELIFASKADMQKSFAVKKKEEKERVAQSAR 188          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_METM5 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps7p PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.074e-41
Identity = 93/191 (48.69%), Postives = 125/191 (65.45%), Query Frame = 3
Query:  123 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 692
            ++KLF +W  E V V D SL  YI V        VPHTAGR + K F KA+  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT+A+CLADE+I A+K     S+A++KK+E ERVA++ R
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYISVAPV----LVPHTAGRNTKKSFDKAKMNIVERLANKLMANQNNTGKKHETLAIVEEALAIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASDSAHKNKKTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQSAR 188          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_METM7 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps7p PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.708e-41
Identity = 92/191 (48.17%), Postives = 125/191 (65.45%), Query Frame = 3
Query:  123 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 692
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT+A+CLADE+I A+K     S+A++KK+E ERVA++ R
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQENTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSAHKNKKTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQSAR 188          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_METM6 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps7p PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.708e-41
Identity = 92/191 (48.17%), Postives = 125/191 (65.45%), Query Frame = 3
Query:  123 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 692
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT+A+CLADE+I A+K     S+A++KK+E ERVA++ R
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSVTPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSAHKNKKTVAQCLADEIIFASKADMQKSFAVRKKEEKERVAQSAR 188          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_ARCFU (30S ribosomal protein S7P OS=Archaeoglobus fulgidus GN=rps7p PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.911e-40
Identity = 87/190 (45.79%), Postives = 127/190 (66.84%), Query Frame = 3
Query:  123 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            ++ +F ++   +VQ++D +L  YI ++      YVPH  GR++   F K +  IVERL N +M  G N GKK++A  IVK A EII   T +NPIQV+VDA+IN+GPRE+  R+   G+   +AVD S  RRV+ A+  +  GAR +AF++ ++IA+CLADE+I AA   S S+A+ KK+E+ERVAK+ R
Sbjct:    9 ELLVFGKYDPSEVQISDPALESYICLEPK----YVPHNHGRHANVPFAKQKVFIVERLINKVMRKGHNTGKKILAYNIVKEAFEIIEKKTKKNPIQVLVDAIINAGPREEVVRLKYGGIAVPKAVDTSSSRRVDIALRNIAEGARRAAFKSKRSIAQCLADEIIAAANNESRSFAVAKKEEVERVAKSAR 194          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_METST (30S ribosomal protein S7P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps7p PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.941e-39
Identity = 86/186 (46.24%), Postives = 127/186 (68.28%), Query Frame = 3
Query:  129 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA 686
            KLF++W   +V V D+ L +Y+ +        VPHT GR+  ++F K++  IVERL N +M   RN+GKK  A  IV+ A+EII+  T QNP+QV+V AV N+ PRE+ TRI   G+  + AVDI+P RRV+ ++  +T GA +SAF+N K+ A+CLADE++ A+   S S+A++KK+E ERVA++
Sbjct:    4 KLFDKWDVTEVTVEDMGLQNYVCLDEI----VVPHTMGRHVKRQFAKSKVSIVERLMNKIMRTERNSGKKNKAYSIVEDALEIINNKTKQNPVQVLVKAVENTAPREETTRIKYGGIGYQIAVDIAPQRRVDLSLGFITKGAMQSAFKNKKSAAQCLADEILLASDEDSRSFAVQKKEEKERVARS 185          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_METTH (30S ribosomal protein S7P OS=Methanobacterium thermoautotrophicum GN=rps7p PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.324e-39
Identity = 83/185 (44.86%), Postives = 130/185 (70.27%), Query Frame = 3
Query:  132 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA 686
            +F++W  ++V+V D+ L+ YI + +      VPHT GR+  ++F K++  IVERL N +M   RN+GKK  A +IV+ A EII+  T +NP+Q++V AV N+ PRE+ TRI   G+  + AVDISP RRV+ ++  +T GA ++AF+N K+I ECLA+E++ AA+  + S+AI+KK+E ER+A++
Sbjct:    4 VFDKWELDEVKVEDMGLAKYICLDSI----LVPHTMGRHVKRQFAKSKVSIVERLINKVMRTERNSGKKNKAYKIVQEAFEIINRRTKENPVQILVKAVENTSPREETTRIKYGGIGYQVAVDISPQRRVDLSLGFITRGAMQAAFKNKKSIEECLANEIMLAAEYDTRSFAIQKKEEKERIARS 184          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_META3 (30S ribosomal protein S7P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps7p PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.375e-39
Identity = 84/191 (43.98%), Postives = 128/191 (67.02%), Query Frame = 3
Query:  123 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 692
            ++KLFN+W   ++ V D SL  YI ++      +VPHT+GR S + F KA+  IVERL N+LM   +N G+K + + IV+ A EII   T++NP++V+V+A+ N GPRE+ TRI   G+   Q+VD+SP RR++ A+  +  G   SA +N K+ A+CLADE++ A+K     S+A++KK+E ERVA++ R
Sbjct:    2 EIKLFNKWDTTEIVVKDPSLRHYINLEPI----FVPHTSGRNSGRMFEKAKMNIVERLVNNLMRAEQNTGQKQVTLSIVEEAFEIIEKRTNENPVKVLVEALENGGPREETTRISYGGIAFLQSVDVSPSRRLDTALRNIAIGTLNSAHKNKKSAAQCLADEIMFASKADMQRSFAVRKKEEKERVAQSAR 188          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_CALMQ (30S ribosomal protein S7P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps7p PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 7.375e-39
Identity = 82/189 (43.39%), Postives = 119/189 (62.96%), Query Frame = 3
Query:  126 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            + LF +W   DV + D  L  Y+ ++       +PHT G+Y  ++F KA  PI+ER+ N LM  GRN GKK  A +I+K A +II++ T +NP+QV VDAV+N  PRE+ TR+   G+    +VD+ P RR++ AI  +  GAR  +F N + I ECLA+E+I AA     SYA++++DE+ERVA   R
Sbjct:   40 ILLFGKWNVNDVVIRDPGLRRYMCLKPM----LLPHTEGKYQNRKFGKAMIPIIERMMNQLMKPGRNAGKKQKAYKILKTAFDIIYVATGKNPVQVFVDAVVNVAPREEITRVIYGGIAYPVSVDVGPTRRLDLAIRWIAEGARACSFNNPRPIEECLANEIIAAANNDPASYALRRRDEMERVAATAR 224          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_METVS (30S ribosomal protein S7P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps7p PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.660e-38
Identity = 86/191 (45.03%), Postives = 123/191 (64.40%), Query Frame = 3
Query:  123 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 692
            ++KLF +W    V V D SL  +I +    +   +PHTAGR S K F K +  +VERL N LM    N GKK   + I++ A+ I+   T +NPIQV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   ++ GA + A ++ K+IA+CLADEL+ A+K     S+A+KKK+E ERVA++ R
Sbjct:    8 EIKLFGKWDSTSVTVKDPSLKSHISL----NPVLIPHTAGRNSKKMFDKNKMHVVERLANKLMATQVNTGKKNEVLSIIEEALTIVENRTKENPIQVVVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNISLGASQGAHKSKKSIAQCLADELVAASKADMQKSFAVKKKEEKERVAQSAR 194          
The following BLAST results are available for this feature:
BLAST of CF838900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS7_METMP2.449e-4250.2630S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM52.074e-4148.6930S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM72.708e-4148.1730S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM62.708e-4148.1730S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_ARCFU3.911e-4045.7930S ribosomal protein S7P OS=Archaeoglobus fulgidu... [more]
RS7_METST1.941e-3946.2430S ribosomal protein S7P OS=Methanosphaera stadtm... [more]
RS7_METTH4.324e-3944.8630S ribosomal protein S7P OS=Methanobacterium ther... [more]
RS7_META37.375e-3943.9830S ribosomal protein S7P OS=Methanococcus aeolicu... [more]
RS7_CALMQ7.375e-3943.3930S ribosomal protein S7P OS=Caldivirga maquilinge... [more]
RS7_METVS3.660e-3845.0330S ribosomal protein S7P OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838900 ID=CF838900; Name=CF838900; organism=Citrus sinensis; type=EST; length=824bp
CGAGCGGCAGCCGTTTCTTATTATTTTATCTCTCTCGCTCTCTCACTCTC
TCATAGCTCTTCATGTAAGAATGGCGACTGCTGTAATGGCACAATCTCAA
GACCCATCACAGCCTCACATACGATGTGAAGCTCTTCAATAGGTGGACTT
TCGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCGTG
CAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTACTC
AGTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTACGA
ACTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCTGTC
AGGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACCGACCAGAA
CCCAATTCAAGTCATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAG
ATGCTACCCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGAT
ATTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATCTACTCACCACTGG
TGCTCGTGAATCTGCTTTTCGTAACATCAAGACTATTGCCGAATGCTTGG
CCGATGAACTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCGATC
AAGAAGAAGGATGAGATTGAGAGAGTGGCAAAGGCCAATCGCTGAGGACG
TGATAGTGGAGAAGCAGATGCAGAAAGTTGTACTTTTAAAAAAAAAAAAA
ACTTTTGGACGATGTTTTGTTGCTATTTTATGAATGTTGTTTCAAGTTTT
GAGTACATGATATTGAGGATGCAT
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