CF838900

Overview
NameCF838900
Unique NameCF838900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:818..1640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_METTP (30S ribosomal protein S7P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps7p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.780e-38
Identity = 78/189 (41.27%), Postives = 126/189 (66.67%), Query Frame = 3
Query:  126 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            +K+F +W   +V++ D+S+  YI ++       V HT GR++ ++F+K++  +VERL N +M   +N G+K +A RIV+ A +IIH  T +NP+ V+V A+ N+GPRE+  R+   G+   +AVD +P RRV+ A+ L+  GA +++F++ ++I  CLADE+I AA     S+A+ +KD IERVAKA R
Sbjct:    1 MKVFGKWDASEVEIPDLSVKGYINLKPR----IVLHTGGRHAKQQFKKSELHVVERLINKMMRKEKNTGQKQIAYRIVEEAFDIIHSRTKENPLSVLVRAISNAGPREEVVRLKYGGITVPKAVDTAPQRRVDTALMLIAKGAWQASFKSRRSIQNCLADEIIAAANYDVKSFAVSRKDSIERVAKAAR 185          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_KORCO (30S ribosomal protein S7P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.780e-38
Identity = 90/202 (44.55%), Postives = 131/202 (64.85%), Query Frame = 3
Query:  126 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLM------------MHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSN-SYAIKKKDEIERVAKANR 692
            +KLF RW+++D+++ + +L + I ++      Y+PHT GR+  K+F K + PIVERL N LM            ++ +N GKKL A+R VK+A EII L T +NPIQV +DA+ NS  RE+ TRI   GV    AVD SP R V+ AI  +  GA   AFR+ +++AE LA+E+I AA+   N S+AI++K+EIER+A ++R
Sbjct:   11 IKLFGRWSYDDLRIENAALKNVISLKPV----YLPHTGGRHEHKKFGKLEIPIVERLVNRLMGQAMNSGSRKDHVNSKNQGKKLKAMRTVKYAFEIIELRTGKNPIQVFLDAIENSIIREEVTRIMYGGVSYFHAVDTSPSRMVDLAIRHIAQGAAMKAFRSPRSLAEALAEEIIAAAEYDRNRSFAIRRKEEIERIALSSR 208          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_METMA (30S ribosomal protein S7P OS=Methanosarcina mazei GN=rps7p PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.154e-38
Identity = 78/188 (41.49%), Postives = 124/188 (65.96%), Query Frame = 3
Query:  129 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK + +R V+ A +II+  T QNPIQ++VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G   +AF++ +++AECLA ELI AA   + S++I +KD  ERVAKA R
Sbjct:    6 KIFGKWDPTEVEVRDLGIKRYVSLAPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTETNTGKKQVTLRAVEEAFDIINRKTQQNPIQILVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNAAAFKSKRSVAECLATELIGAANRDTKSFSINRKDAKERVAKAAR 189          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_METAC (30S ribosomal protein S7P OS=Methanosarcina acetivorans GN=rps7p PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.065e-37
Identity = 78/188 (41.49%), Postives = 124/188 (65.96%), Query Frame = 3
Query:  129 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK + +R V+ A +I++  T QNPIQV+VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G   +AF++ +++AECLA ELI AA   + S++I +KD  ERVAKA R
Sbjct:    6 KIFGKWDPTEVEVKDLGIKRYVSLTPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTETNTGKKQVTLRAVEEAFDIVNKKTKQNPIQVLVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNAAAFKSKRSVAECLATELIGAANRDTKSFSINRKDAKERVAKAAR 189          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_METBF (30S ribosomal protein S7P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps7p PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.391e-37
Identity = 79/189 (41.80%), Postives = 123/189 (65.08%), Query Frame = 3
Query:  126 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            +K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK   +R V+ A +I+   T QNPIQV+VDA+ N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G   +AF++ +++AECLA ELI AA   + S+AI +KD  ERVAKA R
Sbjct:    1 MKIFGKWDPTEVEVRDLGIKRYVSLTPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTEINTGKKQKTLRAVEEAFDIVSKKTKQNPIQVLVDAIANAGPREEVVRLKYGGISVPKAVDTAPQRRVDTALRYISMGTNNAAFKSKRSVAECLATELIGAANRDTKSFAINRKDAKERVAKAAR 185          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_HALMA (30S ribosomal protein S7P OS=Haloarcula marismortui GN=rps7p PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.373e-37
Identity = 85/192 (44.27%), Postives = 115/192 (59.90%), Query Frame = 3
Query:  117 TYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            T   KLF  W   D++ +D S   YI V      T + HT GR++ K+F+K++  IVERL N LM    N GKK +A  IV  A E++H  TD+NPIQV+V AV NS PRE+  R+   G+   +AVD++P RRV+QA+  L  G    +F+   T AE LA +LI AA     +YA+ +K+E ERVA A R
Sbjct:   21 TARAKLFGEWDITDIEYSDPSTERYITV------TPIAHTMGRHADKQFKKSEISIVERLINRLMQTDENTGKKQLATSIVTEAFELVHERTDENPIQVLVSAVENSAPREETVRLKYGGISVPKAVDVAPQRRVDQALKFLAEGVYGGSFKTTTTAAEALAQQLIGAANDDVQTYAVNQKEEKERVAAAAR 206          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_METHJ (30S ribosomal protein S7P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps7p PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.047e-37
Identity = 80/187 (42.78%), Postives = 118/187 (63.10%), Query Frame = 3
Query:  132 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            LFNRW   +V + D  ++ Y+ +    ++  VPH+ GR + + F KA   IVERL N LM    N GKK +A+RIV+ A EI+H  T +NPI+V+ DAV N+GPRE+  R+   G+   ++VD +P+RRVN A+ L+  G   ++ +  K +A  LA+ELI AA G    Y++ K++E ERVAK+ R
Sbjct:   12 LFNRWDTSEVTIRDPGIARYVNL----NSMMVPHSCGRLTRQEFHKANMLIVERLINQLMRTEVNTGKKQLAIRIVRDAFEIVHQKTKKNPIEVLCDAVANAGPREETVRLKYGGINVPKSVDTAPMRRVNTAVGLIAAGVYSASHKKKKPVANALAEELIAAANGDVKCYSVAKREERERVAKSAR 194          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_METBU (30S ribosomal protein S7P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps7p PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 4.047e-37
Identity = 77/188 (40.96%), Postives = 125/188 (66.49%), Query Frame = 3
Query:  129 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            KLF +W   +V+V D  +  Y+ +        VPHT+G+++ ++F K+   IVERL N++M + +N GKK +A+RIV  A +I++  T +NP+QV+V+AV N+GPRE+  R+   G+   +AVD +P RRV+ A+  ++ G+ ++AF++ ++ AECLA ELI A+   +  ++I +KD  ERVAKA R
Sbjct:    3 KLFGKWDLTEVEVADAGIKRYVNLDPV----IVPHTSGKHARQQFNKSDITIVERLVNNVMRNAQNTGKKQIALRIVDEAFDIVNSKTKKNPVQVLVEAVSNAGPREEVVRLKYGGISVPKAVDTAPQRRVDHALRNISIGSNQTAFKSKRSAAECLASELIAASNRDAKCFSINRKDGKERVAKAAR 186          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_CENSY (30S ribosomal protein S7P OS=Cenarchaeum symbiosum GN=rps7p PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.623e-36
Identity = 87/201 (43.28%), Postives = 127/201 (63.18%), Query Frame = 3
Query:  117 TYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMH---------GRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            T ++ LF +W   D++V D  L   I ++       +P+T GR ++KRF KA   IVERL N  MMH         GR  GKK+ ++  VK A EII+L T +NP++V+V AV NS P ED TRI   G V   +VD+SPLRRV+ A+  +  G +E+AFR  K++ E LA+ LI AA  ++++ ++KKK+E+ER+A+A+R
Sbjct:    4 TQNLLLFRKWDLSDIEVVDPGLKTAISLRKMT----LPYTYGRSALKRFNKADANIVERLANK-MMHFGKKYAKNTGRMAGKKMGSINTVKTAFEIINLKTGRNPVEVLVRAVENSAPNEDTTRIVYGGTVYHVSVDVSPLRRVDLALRFIADGVKEAAFRKPKSLEEFLAEHLILAANNTTDAPSVKKKNELERIAQASR 199          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_THEGJ (30S ribosomal protein S7P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps7p PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.426e-36
Identity = 87/206 (42.23%), Postives = 121/206 (58.74%), Query Frame = 3
Query:  123 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            ++K+F RW+ EDV VND SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV++ A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  T A+ LA+E+I AA     S+A  KK+EIER+A+++R
Sbjct:   14 ELKVFGRWSVEDVTVNDPSLRPYIALEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDVALKNIALGASIKCYRNKTTYAQALAEEIIAAANRDPKSFAYSKKEEIERIAQSSR 215          
The following BLAST results are available for this feature:
BLAST of CF838900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS7_METTP4.780e-3841.2730S ribosomal protein S7P OS=Methanosaeta thermoph... [more]
RS7_KORCO4.780e-3844.5530S ribosomal protein S7P OS=Korarchaeum cryptofil... [more]
RS7_METMA8.154e-3841.4930S ribosomal protein S7P OS=Methanosarcina mazei ... [more]
RS7_METAC1.065e-3741.4930S ribosomal protein S7P OS=Methanosarcina acetiv... [more]
RS7_METBF1.391e-3741.8030S ribosomal protein S7P OS=Methanosarcina barker... [more]
RS7_HALMA2.373e-3744.2730S ribosomal protein S7P OS=Haloarcula marismortu... [more]
RS7_METHJ4.047e-3742.7830S ribosomal protein S7P OS=Methanospirillum hung... [more]
RS7_METBU4.047e-3740.9630S ribosomal protein S7P OS=Methanococcoides burt... [more]
RS7_CENSY2.623e-3643.2830S ribosomal protein S7P OS=Cenarchaeum symbiosum... [more]
RS7_THEGJ3.426e-3642.2330S ribosomal protein S7P OS=Thermococcus gammatol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838900 ID=CF838900; Name=CF838900; organism=Citrus sinensis; type=EST; length=824bp
CGAGCGGCAGCCGTTTCTTATTATTTTATCTCTCTCGCTCTCTCACTCTC
TCATAGCTCTTCATGTAAGAATGGCGACTGCTGTAATGGCACAATCTCAA
GACCCATCACAGCCTCACATACGATGTGAAGCTCTTCAATAGGTGGACTT
TCGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCGTG
CAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTACTC
AGTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTACGA
ACTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCTGTC
AGGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACCGACCAGAA
CCCAATTCAAGTCATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAG
ATGCTACCCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGAT
ATTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATCTACTCACCACTGG
TGCTCGTGAATCTGCTTTTCGTAACATCAAGACTATTGCCGAATGCTTGG
CCGATGAACTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCGATC
AAGAAGAAGGATGAGATTGAGAGAGTGGCAAAGGCCAATCGCTGAGGACG
TGATAGTGGAGAAGCAGATGCAGAAAGTTGTACTTTTAAAAAAAAAAAAA
ACTTTTGGACGATGTTTTGTTGCTATTTTATGAATGTTGTTTCAAGTTTT
GAGTACATGATATTGAGGATGCAT
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