CF838900

Overview
NameCF838900
Unique NameCF838900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:818..1640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_PYRAB (30S ribosomal protein S7P OS=Pyrococcus abyssi GN=rps7p PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.188e-34
Identity = 84/209 (40.19%), Postives = 120/209 (57.42%), Query Frame = 3
Query:  114 LTYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            + +++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +R   + AE LA+E+I AA     SYA  KK EIER+A+++R
Sbjct:   11 IPHEIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_HALMO (30S ribosomal protein S7P OS=Halococcus morrhuae GN=rps7p PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.219e-33
Identity = 78/188 (41.49%), Postives = 115/188 (61.17%), Query Frame = 3
Query:  129 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            KLF RW    ++ +D S   YI V      T V HT GR++ K+F+K++  IVERL N LM    N GKK  A RIV++A ++I   T+++P+QV+V AV N+ PRE+  R+   G+   QAVD++P RRV+QA+  +  G   ++F++     E LA++L  AA     +YA+ +K+E ERVA A R
Sbjct:   22 KLFERWDVTGIEYDDPSTERYITV------TPVEHTMGRHAGKQFQKSEISIVERLINRLMQTDENTGKKQQATRIVRNAFDLIAERTEESPVQVLVSAVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIAEGTHSASFKSPTDAHEALAEQLTGAANYDVQTYAVNQKEEKERVAAAAR 203          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_NATPD (30S ribosomal protein S7P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps7p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.715e-33
Identity = 76/188 (40.43%), Postives = 112/188 (59.57%), Query Frame = 3
Query:  129 KLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            +LF  W   +++ +D S   YI V      T + HT GR+S K+F+K++  IVERL N LM    N GKK  A +IV+ A +I+   TD+NP+QV+V AV N+GPRE+  R+   G+   +AVD++P RRV+ A+  +  G    +F+    + E LA +LI AA     +Y + +K+E ERVA A R
Sbjct:   22 QLFGEWEIGEIEYDDPSTRRYITV------TPIAHTMGRHSEKQFKKSEISIVERLINRLMQTDENTGKKQQATKIVREAFDIVAERTDENPVQVLVTAVENAGPREETVRLKYGGISVPKAVDVAPQRRVDLALKFIAEGTYNDSFKTTTPVEEALAHQLIGAANYDLQAYPVSQKEEQERVAAAAR 203          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_PICTO (30S ribosomal protein S7P OS=Picrophilus torridus GN=rps7p PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.545e-33
Identity = 74/190 (38.95%), Postives = 117/190 (61.58%), Query Frame = 3
Query:  123 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            D  +  ++    +Q++D+ L+ YI +    ++ +  HT GRYS     K     +ERL N LM   +  GKK  A R++K A EI+   T QNP+QV+++A+ NS PRE+ TR+   G+   ++VD+SP RR+++A+  +  GA   +F++   I ECLA+E+I A++   NSYA+ KK+EIERVA + R
Sbjct:    2 DRLIMGKYDVSGIQIHDMGLAKYINL----NSYFNLHTGGRYSNYSAGKRNVNTIERLLNKLMRTEKWTGKKYSAYRVLKEAFEIVEQKTKQNPVQVLINAIENSAPREEVTRLKYGGIAVPKSVDVSPSRRLDEALRNICIGATSKSFKSKVPIEECLANEIILASRNDGNSYAVSKKEEIERVAASAR 187          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_HALWD (30S ribosomal protein S7P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps7p PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.298e-32
Identity = 73/190 (38.42%), Postives = 113/190 (59.47%), Query Frame = 3
Query:  123 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            + KLF  W   +++  D S   YI V      T + HT GR++ K+F K++  +VERL N LM    N G K   + IV+ A + IH  T++NP+QV+V  V N+ PRE+  R+   G+   QAVD++P RRV+QA+  +  G +  ++++ ++ A+ LA  +I AA     SYA+ +K+E ERVA+A R
Sbjct:   44 NAKLFGEWDVSEIEYEDPSTQRYITV------TPIAHTMGRHAAKQFEKSKISVVERLINRLMQTEDNTGHKQKTMNIVEDAFDTIHNRTEENPVQVLVRGVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIADGTQRGSYKSAQSAADSLAQVIIGAANYDVQSYAVGQKEESERVAEAAR 227          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_NANEQ (30S ribosomal protein S7P OS=Nanoarchaeum equitans GN=rps7p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.686e-32
Identity = 83/200 (41.50%), Postives = 112/200 (56.00%), Query Frame = 3
Query:  126 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGR-----------NNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            +KLF RW +EDV V D  L DYI ++       +P++ GR+   RF KA+ PI+ERL   LM  G              GKK  A +I+    EII   T QNP++V V A+ N+ PRE+ T I   G    +AVD SP RRV+ AI  +  GA   + +   +I E LA+E+INA   S  SYAIK+K EIE+ A++ R
Sbjct:    3 MKLFGRWDYEDVTVEDPGLRDYINLKPM----LIPYSGGRHQKHRFGKAKIPIIERLAGRLMTSGHLGKKHKWTSEHQTGKKYNAYKIIIRTFEIIEKRTKQNPLKVFVKAIENAAPREETTTIEYGGARYPKAVDCSPQRRVDLAIRHMVWGAFHGSRKKPISIEEALAEEIINAYNNSLKSYAIKRKLEIEKTAESAR 198          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_RHOPB (30S ribosomal protein S7 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.982e-11
Identity = 52/154 (33.77%), Postives = 80/154 (51.95%), Query Frame = 3
Query:  231 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            H+A +  V    K    I+ +  NS+M  G    KK +A  IV  A+EII   T Q P+ V   A+ N  P  +       G   +  V++  +RR    I  L + AR+   RN KT+ E L+ EL++A+ G  N  A+KK++++ R+A+ANR
Sbjct:    5 HSAEKREVNPDPKFGNVILTKFMNSVMYAG----KKSVAEGIVYGALEIIEAKTKQGPLPVFEQALENVMPTIEVRSRRVGGATYQVPVEVRSVRRQALGIRWLISAARD---RNEKTMTERLSAELLDASNGRGN--AVKKREDVHRMAEANR 149          
BLAST of CF838900 vs. ExPASy Swiss-Prot
Match: RS7_AZOC5 (30S ribosomal protein S7 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpsG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.982e-11
Identity = 52/154 (33.77%), Postives = 76/154 (49.35%), Query Frame = 3
Query:  231 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 692
            H A R  V    K    IV R  NS+M     +GKK +A  IV  A++++      NP+ + V A+ N  P  +       G   +  V++   RR   AI  L   AR    RN KT+ E L+ EL++AA    N  A+KK+++  R+A+ANR
Sbjct:    5 HKAERREVIPDAKFGNIIVSRFMNSIM----RDGKKSVAESIVYGALDVVEAKAKSNPLDLFVTALENVAPAVEVRSRRVGGATYQVPVEVRTERRQTLAIRWLIASARA---RNEKTMVERLSAELLDAANNRGN--AVKKREDTHRMAEANR 149          
The following BLAST results are available for this feature:
BLAST of CF838900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS7_PYRAB4.188e-3440.1930S ribosomal protein S7P OS=Pyrococcus abyssi GN=... [more]
RS7_HALMO1.219e-3341.4930S ribosomal protein S7P OS=Halococcus morrhuae G... [more]
RS7_NATPD2.715e-3340.4330S ribosomal protein S7P OS=Natronomonas pharaoni... [more]
RS7_PICTO3.545e-3338.9530S ribosomal protein S7P OS=Picrophilus torridus ... [more]
RS7_HALWD2.298e-3238.4230S ribosomal protein S7P OS=Haloquadratum walsbyi... [more]
RS7_NANEQ6.686e-3241.5030S ribosomal protein S7P OS=Nanoarchaeum equitans... [more]
RS7_RHOPB4.982e-1133.7730S ribosomal protein S7 OS=Rhodopseudomonas palus... [more]
RS7_AZOC54.982e-1133.7730S ribosomal protein S7 OS=Azorhizobium caulinoda... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838900 ID=CF838900; Name=CF838900; organism=Citrus sinensis; type=EST; length=824bp
CGAGCGGCAGCCGTTTCTTATTATTTTATCTCTCTCGCTCTCTCACTCTC
TCATAGCTCTTCATGTAAGAATGGCGACTGCTGTAATGGCACAATCTCAA
GACCCATCACAGCCTCACATACGATGTGAAGCTCTTCAATAGGTGGACTT
TCGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCGTG
CAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTACTC
AGTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTACGA
ACTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCTGTC
AGGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACCGACCAGAA
CCCAATTCAAGTCATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAG
ATGCTACCCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGAT
ATTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATCTACTCACCACTGG
TGCTCGTGAATCTGCTTTTCGTAACATCAAGACTATTGCCGAATGCTTGG
CCGATGAACTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCGATC
AAGAAGAAGGATGAGATTGAGAGAGTGGCAAAGGCCAATCGCTGAGGACG
TGATAGTGGAGAAGCAGATGCAGAAAGTTGTACTTTTAAAAAAAAAAAAA
ACTTTTGGACGATGTTTTGTTGCTATTTTATGAATGTTGTTTCAAGTTTT
GAGTACATGATATTGAGGATGCAT
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