CF838905
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL5N_ARATH (Putative RING-H2 finger protein ATL5N OS=Arabidopsis thaliana GN=ATL5N PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.409e-12 Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 2 Query: 140 LDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 346 +D S + +P Y I + DCAVCL EF + R+LPKC H FHV+CID W ++S CPLCR Sbjct: 96 IDQSFIDALPLLHYKTMIGLRHDLSDCAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLCR 164
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL5M_ARATH (RING-H2 finger protein ATL5M OS=Arabidopsis thaliana GN=ATL5M PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12 Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 2 Query: 167 PAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 355 P VYS ++E +CA+CLSEFE E+ +VL KC+H FHV CI W + S+CP CR + Sbjct: 90 PTLVYSSDLELAGAEAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSI 152
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL3D_ARATH (RING-H2 finger protein ATL3D OS=Arabidopsis thaliana GN=ATL3D PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.366e-12 Identity = 26/75 (34.67%), Postives = 46/75 (61.33%), Query Frame = 2 Query: 140 LDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 364 LD + ++ +P + + +E +C +CL FE+ E +VLP C H +H +C+D W ++ S+CPLCR +++D Sbjct: 81 LDPAEIRSLPVVLCRRERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVD 155
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.366e-12 Identity = 31/64 (48.44%), Postives = 37/64 (57.81%), Query Frame = 2 Query: 155 LKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 346 LK YS + P +CA+CLSEF E ++LP C H FHV CID W SHS+CP CR Sbjct: 110 LKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCR 173
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL2L_ARATH (RING-H2 finger protein ATL2L OS=Arabidopsis thaliana GN=ATL2L PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.009e-12 Identity = 35/107 (32.71%), Postives = 54/107 (50.47%), Query Frame = 2 Query: 134 QALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDITLVHPLVQVEEVVSVIEPTERDLGVVHQM 454 + L+ +++ +P F +CAVCLS ++ + R LP C+H+FHVDC+D W + S CP+CR T V P ++E EP E +G Q+ Sbjct: 80 RGLNPTVIASLPTFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCR-------TEVEPRPRLEP-----EPREGPVGTAPQL 174
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL5A_ARATH (RING-H2 finger protein ATL5A OS=Arabidopsis thaliana GN=ATL5A PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.154e-12 Identity = 32/64 (50.00%), Postives = 37/64 (57.81%), Query Frame = 2 Query: 155 LKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 346 LK+ P Y E +CA+CL EF D E RVLP C H FH+ CID W SHS+CP CR Sbjct: 85 LKKFPVAEYGSG-EVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCR 147
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: RHA4A_ARATH (RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11 Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 2 Query: 218 CAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDIT 370 C VCL EFE E +P C+H+FH+DCI +W SH+ CPLCR+ V + T Sbjct: 105 CCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSVSISST 155
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL4L_ARATH (RING-H2 finger protein ATL4L OS=Arabidopsis thaliana GN=ATL4L PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11 Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 2 Query: 188 NIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR---APVQLD 364 ++ D +CA+C++EF + E R+LP C H FHV CID W S S+CP CR PV+ D Sbjct: 103 SVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCD 164
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL4F_ARATH (RING-H2 finger protein ATL4F OS=Arabidopsis thaliana GN=ATL4F PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11 Identity = 35/101 (34.65%), Postives = 53/101 (52.48%), Query Frame = 2 Query: 128 AHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV--QLDITLVHPLVQVEEVVSVIEPT 424 A L I + +P +Y + C+VCL +++ E + +P C H FH++CID+W SH+ CPLCR + + + L H Q E+VS IE T Sbjct: 69 AELGLSKDIREMLPIVIYKESFT--VNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSVDLSH---QSIEIVSSIENT 164
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL2A_ARATH (RING-H2 finger protein ATL2A OS=Arabidopsis thaliana GN=ATL2A PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11 Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 2 Query: 215 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR---APVQLD 364 +CA+CL++F D E RVLP C H FHV+CID W S S+CP CR PV+ D Sbjct: 101 ECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTPVRCD 153 The following BLAST results are available for this feature:
BLAST of CF838905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838905 ID=CF838905; Name=CF838905; organism=Citrus sinensis; type=EST; length=782bpback to top |