CF838905

Overview
NameCF838905
Unique NameCF838905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL5N_ARATH (Putative RING-H2 finger protein ATL5N OS=Arabidopsis thaliana GN=ATL5N PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.409e-12
Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 2
Query:  140 LDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 346
            +D S +  +P   Y   I    +  DCAVCL EF   +  R+LPKC H FHV+CID W  ++S CPLCR
Sbjct:   96 IDQSFIDALPLLHYKTMIGLRHDLSDCAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLCR 164          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL5M_ARATH (RING-H2 finger protein ATL5M OS=Arabidopsis thaliana GN=ATL5M PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 2
Query:  167 PAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 355
            P  VYS ++E      +CA+CLSEFE  E+ +VL KC+H FHV CI  W  + S+CP CR  +
Sbjct:   90 PTLVYSSDLELAGAEAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSI 152          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL3D_ARATH (RING-H2 finger protein ATL3D OS=Arabidopsis thaliana GN=ATL3D PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.366e-12
Identity = 26/75 (34.67%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  140 LDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLD 364
            LD + ++ +P  +      + +E  +C +CL  FE+ E  +VLP C H +H +C+D W ++ S+CPLCR  +++D
Sbjct:   81 LDPAEIRSLPVVLCRRERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVD 155          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.366e-12
Identity = 31/64 (48.44%), Postives = 37/64 (57.81%), Query Frame = 2
Query:  155 LKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 346
            LK      YS  +  P    +CA+CLSEF   E  ++LP C H FHV CID W  SHS+CP CR
Sbjct:  110 LKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCR 173          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL2L_ARATH (RING-H2 finger protein ATL2L OS=Arabidopsis thaliana GN=ATL2L PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.009e-12
Identity = 35/107 (32.71%), Postives = 54/107 (50.47%), Query Frame = 2
Query:  134 QALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDITLVHPLVQVEEVVSVIEPTERDLGVVHQM 454
            + L+ +++  +P F             +CAVCLS  ++ +  R LP C+H+FHVDC+D W  + S CP+CR       T V P  ++E      EP E  +G   Q+
Sbjct:   80 RGLNPTVIASLPTFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCR-------TEVEPRPRLEP-----EPREGPVGTAPQL 174          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL5A_ARATH (RING-H2 finger protein ATL5A OS=Arabidopsis thaliana GN=ATL5A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.154e-12
Identity = 32/64 (50.00%), Postives = 37/64 (57.81%), Query Frame = 2
Query:  155 LKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 346
            LK+ P   Y    E      +CA+CL EF D E  RVLP C H FH+ CID W  SHS+CP CR
Sbjct:   85 LKKFPVAEYGSG-EVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCR 147          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: RHA4A_ARATH (RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 2
Query:  218 CAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDIT 370
            C VCL EFE  E    +P C+H+FH+DCI +W  SH+ CPLCR+ V +  T
Sbjct:  105 CCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSVSISST 155          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL4L_ARATH (RING-H2 finger protein ATL4L OS=Arabidopsis thaliana GN=ATL4L PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 2
Query:  188 NIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR---APVQLD 364
            ++ D     +CA+C++EF + E  R+LP C H FHV CID W  S S+CP CR    PV+ D
Sbjct:  103 SVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCD 164          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL4F_ARATH (RING-H2 finger protein ATL4F OS=Arabidopsis thaliana GN=ATL4F PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 35/101 (34.65%), Postives = 53/101 (52.48%), Query Frame = 2
Query:  128 AHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV--QLDITLVHPLVQVEEVVSVIEPT 424
            A   L   I + +P  +Y  +         C+VCL +++  E  + +P C H FH++CID+W  SH+ CPLCR  +  +  + L H   Q  E+VS IE T
Sbjct:   69 AELGLSKDIREMLPIVIYKESFT--VNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSVDLSH---QSIEIVSSIENT 164          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL2A_ARATH (RING-H2 finger protein ATL2A OS=Arabidopsis thaliana GN=ATL2A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 2
Query:  215 DCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR---APVQLD 364
            +CA+CL++F D E  RVLP C H FHV+CID W  S S+CP CR    PV+ D
Sbjct:  101 ECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTPVRCD 153          
The following BLAST results are available for this feature:
BLAST of CF838905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ATL5N_ARATH2.409e-1246.38Putative RING-H2 finger protein ATL5N OS=Arabidops... [more]
ATL5M_ARATH3.146e-1247.62RING-H2 finger protein ATL5M OS=Arabidopsis thalia... [more]
ATL3D_ARATH5.366e-1234.67RING-H2 finger protein ATL3D OS=Arabidopsis thalia... [more]
ATL1L_ARATH5.366e-1248.44RING-H2 finger protein ATL1L OS=Arabidopsis thalia... [more]
ATL2L_ARATH7.009e-1232.71RING-H2 finger protein ATL2L OS=Arabidopsis thalia... [more]
ATL5A_ARATH9.154e-1250.00RING-H2 finger protein ATL5A OS=Arabidopsis thalia... [more]
RHA4A_ARATH7.749e-1150.98RING-H2 zinc finger protein RHA4a OS=Arabidopsis t... [more]
ATL4L_ARATH7.749e-1145.16RING-H2 finger protein ATL4L OS=Arabidopsis thalia... [more]
ATL4F_ARATH7.749e-1134.65RING-H2 finger protein ATL4F OS=Arabidopsis thalia... [more]
ATL2A_ARATH7.749e-1154.72RING-H2 finger protein ATL2A OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06P02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838905 ID=CF838905; Name=CF838905; organism=Citrus sinensis; type=EST; length=782bp
TGCCAGTTGCCCTTTATACCGCCACCGGCACCGTTACCGTTACCGTCACC
CCCTCAGACACCGCCGTGCCCATCGGCTCTTCTTTCTCTCTAGCGGTGCT
AATACCATGAACACAGCTCCTCCTCACGCTCATCAAGCTTTGGACCTCTC
TATTCTCAAAAGGATACCCGCTTTTGTCTACTCACCAAACATAGAAGACC
CCAAGGAGCCGCTAGACTGCGCCGTTTGCTTGTCGGAATTTGAAGACAAC
GAAAATGGCCGTGTCTTGCCCAAGTGTAGACATGTATTCCATGTTGATTG
CATCGACATGTGGTTTCAATCTCACTCTAATTGTCCACTCTGTAGAGCCC
CGGTTCAACTTGACATCACTCTGGTCCATCCACTGGTCCAAGTCGAAGAG
GTTGTCTCCGTTATCGAACCTACTGAGAGGGACTTAGGTGTTGTTCATCA
GATGGGTTGCTCGTCTTCTTCTTCTTCATCATCTTCTTTGCCGCAATTGG
AGAGTGTGTCGGTGGAGATACCTCGAGCTCGAGAGAACTTCAGAGGTTTG
GATGATATGGGTTTGAGTTTAACTAATGAACGCAACGGGTTCAAGTCTCC
GGGTAATCGGGTTCTAACTTTGAAGAGGATTTGGAGCATATGACTGCTTT
GCTGTTCAACTGACGAGAAAAGATAAAATTGAATCACCACAAGAGGACGG
ACCATTCTGTCTGTTGCCAACATGTGGTGGATATTTTGCAGAAGTGGCAA
ATTAATGCAACACCTATGTACAAATAATGTAT
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