CF838911

Overview
NameCF838911
Unique NameCF838911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838911 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.041e-16
Identity = 87/277 (31.41%), Postives = 115/277 (41.52%), Query Frame = 2
Query:   20 MATSTMA----LSSSFV-----GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 733
            MAT++ A    LSSSF+      +A+  AP    +  GG  + ++    + ++   W    R    G  +   P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S   +   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A   GK PL
Sbjct:    1 MATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARV--GGAATPKRFTVLAAAAKKSWIPAVR----GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CF838911 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.724e-15
Identity = 68/204 (33.33%), Postives = 86/204 (42.16%), Query Frame = 2
Query:  212 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 733
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LK+ EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CF838911 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.139e-14
Identity = 68/204 (33.33%), Postives = 87/204 (42.65%), Query Frame = 2
Query:  212 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPLYPGGSF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 733
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAML  LG    +  A  G+      WF+AGA            +P  +   S   +   Q++LMG VE  R                     A        +  YPGG F DPL LA          D +    LK+ EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQ--AWTGIP-----WFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256          
BLAST of CF838911 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.665e-13
Identity = 66/170 (38.82%), Postives = 80/170 (47.06%), Query Frame = 2
Query:  278 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG----EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 775
            P  + + R  EV + R AML  +GCV+PELL  NGV F   VW K     F                    A+ + QVV    +E +R  GG  G    E  D  YPG  FDP  L  +       K  EIKNGRLAM  MFG  VQ  VT +GP+ NL +HL  P+  N
Sbjct:    1 PTVYERMRVAEVFNGRLAMLAIVGCVYPELLG-NGVWF--EVWNKVDFYRF--------------------ALISLQVV--APLEYWRGNGG-FGWDGEEKYDRSYPG--FDPCNLTTE-----YTKAAEIKNGRLAMIGMFGLEVQNHVTAQGPVANLIEHLRHPLAAN 137          
The following BLAST results are available for this feature:
BLAST of CF838911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CB4A_SOLLC6.041e-1631.41Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC8.724e-1533.33Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL1.139e-1433.33Chlorophyll a-b binding protein CP24, chloroplasti... [more]
LH15_EUGGR3.665e-1338.82Light-harvesting complex I LH35 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06P11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838911 ID=CF838911; Name=CF838911; organism=Citrus sinensis; type=EST; length=776bp
CAACTCTGATCCTTTTAAAATGGCAACCTCGACCATGGCTCTCTCCTCAT
CCTTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGC
AATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTC
AGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCT
CTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGT
TGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCG
TGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGAT
GCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCC
GTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTA
CTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGG
CTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGA
GGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGA
TCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTA
AGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTC
GTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCA
CTTGGCTGACCCTGTCAATAACAATG
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