CF838921

Overview
NameCF838921
Unique NameCF838921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838921 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.550e-47
Identity = 101/216 (46.76%), Postives = 142/216 (65.74%), Query Frame = 3
Query:  174 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVA 818
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  +LR+FF   IYDVK++M+ C++L GGL  VA
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVA 213          
BLAST of CF838921 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.247e-46
Identity = 99/216 (45.83%), Postives = 144/216 (66.67%), Query Frame = 3
Query:  174 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVA 818
            EVWASNLE E   I +++  Y +I+MDTEFPG+V         RP    R   D+ Y++L+ NVD L +IQ+GLT ++  G  P   SG N    W+FNF+ F++  D ++ DSI+LL   G+ F+++ EEG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  +L +FF  +IYDVK++M+ C++L GGL  VA
Sbjct:   14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVA 213          
BLAST of CF838921 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.247e-46
Identity = 99/216 (45.83%), Postives = 144/216 (66.67%), Query Frame = 3
Query:  174 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVA 818
            EVWASNLE E   I +++  Y +I+MDTEFPG+V         RP    R   D+ Y++L+ NVD L +IQ+GLT ++  G  P   SG N    W+FNF+ F++  D ++ DSI+LL   G+ F+++ EEG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  +L +FF  +IYDVK++M+ C++L GGL  VA
Sbjct:   14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVA 213          
BLAST of CF838921 vs. ExPASy Swiss-Prot
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.127e-46
Identity = 100/216 (46.30%), Postives = 141/216 (65.28%), Query Frame = 3
Query:  174 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVA 818
            EVWA NL+ + + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  +LR+FF   IYDVK++M+ C++L GGL  VA
Sbjct:   14 EVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVA 213          
BLAST of CF838921 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.190e-46
Identity = 100/216 (46.30%), Postives = 141/216 (65.28%), Query Frame = 3
Query:  174 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVA 818
            EVWA NLE E + I QV  ++ +I+MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG++++ FAEL+M+SG+V  E V W++FHS YDFGYL+KIL+   LP    +F  +LR+FF   IYDVK++M+ C++L GGL  VA
Sbjct:   14 EVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFF-PIIYDVKYLMKSCKNLKGGLQEVA 213          
BLAST of CF838921 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.084e-46
Identity = 100/216 (46.30%), Postives = 141/216 (65.28%), Query Frame = 3
Query:  174 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVA 818
            EVWA NL+ + + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  +LR+FF   IYDVK++M+ C++L GGL  VA
Sbjct:   14 EVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFVNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVA 213          
BLAST of CF838921 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.805e-37
Identity = 83/206 (40.29%), Postives = 130/206 (63.11%), Query Frame = 3
Query:  171 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQ 788
            R+VW SNL SEF +I Q++ +Y  +S+ TEF G + RP         FR  K   HY+ +++NVD LN IQ+GL+LSD++GN PD     N    W+FNF +FD   +  + +S+ELLR  GI+FE++   G+D   F++L+M SGL+ ++SV+W+T+H+AYD G+L+ IL   S+P+  ++F   +  +   N YD+  + +  Q
Sbjct:  161 RDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGT------FRS-KVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPD-----NGPSTWQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYM-PNFYDLNLVYKIIQ 352          
BLAST of CF838921 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.133e-31
Identity = 82/218 (37.61%), Postives = 123/218 (56.42%), Query Frame = 3
Query:  177 VWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRF--CQS--LYGGLDRVA 818
            V+ SN+E EF  I   ++ YP+++MDTEFPG+V  P         FR ++  ++ +V   NV+ L LIQVG  + +  G LP  G       +W+FNF +F  A D  + +S+E+LR  GIDF   +  G+ +  F EL+ +SGL+ +  ++W+TF S YDFGYL+K +T   LP     F    +  F  + +D+K ++R   C S  L GGL  VA
Sbjct:   26 VYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATP------LGTFRSKEDFNYQQVF-CNVNMLKLIQVGFAMVNDKGELPPTGD------VWQFNF-NFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTS-FDIKILLRTPNCASAKLKGGLQEVA 228          
BLAST of CF838921 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.602e-28
Identity = 75/220 (34.09%), Postives = 116/220 (52.73%), Query Frame = 3
Query:  171 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAEL-MMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSL--YGGLDRVAR 821
            R VW SN++ E   +++ + R+P I+ DTE+PG+++R   D S+          + Y+ +K NV+   LIQ G TL ++ G +     GG    +WE NF +F   +D     SIE LR  G+D ++ R+EGVD   +     + +     + V +VTF  AYDF Y + IL    LP    EF T +   FG  +YD K +  FC+ L  + GL ++A+
Sbjct:   10 RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSS---------DECYRAMKGNVENTKLIQCGFTLFNAKGEI-----GG----VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFG-QVYDTKVMAGFCEGLGEHLGLSKLAQ 210          
BLAST of CF838921 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.142e-22
Identity = 74/220 (33.64%), Postives = 102/220 (46.36%), Query Frame = 3
Query:  174 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNES---VSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVA 818
            EVW  N ++E   I   +     I++DTEFPG +    +D S    +R          +K NVD  +LIQ+GLTL          G G      WE N  DF+ +       SI  L+  G+D ++ REEG+      E  M    + NE    + WVTF  +YD  YL+K LTR+ LP    EF   ++   G  +YDVK +   C  L    GL R+A
Sbjct:    4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRD---------MKFNVDNTHLIQLGLTL---------FGKGITKT--WEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIA 200          
The following BLAST results are available for this feature:
BLAST of CF838921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CNOT7_BOVIN9.550e-4746.76CCR4-NOT transcription complex subunit 7 OS=Bos ta... [more]
CNOT8_MOUSE1.247e-4645.83CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN1.247e-4645.83CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]
CNOT7_XENLA2.127e-4646.30CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT7_DANRE6.190e-4646.30CCR4-NOT transcription complex subunit 7 OS=Danio ... [more]
CNOT7_XENTR8.084e-4646.30CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
POP2_YEAST1.805e-3740.29Poly(A) ribonuclease POP2 OS=Saccharomyces cerevis... [more]
CNOT7_CAEEL1.133e-3137.61CCR4-NOT transcription complex subunit 7 OS=Caenor... [more]
CAF1A_ARATH7.602e-2834.09Probable CCR4-associated factor 1 homolog 1 OS=Ara... [more]
CAF1E_ARATH2.142e-2233.64Probable CCR4-associated factor 1 homolog 5 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06P22_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838921 ID=CF838921; Name=CF838921; organism=Citrus sinensis; type=EST; length=821bp
CTCTCAAGCACCCTTTAAAGCCAGCAACAGTAAAGACTTTCAAATCTCAC
TCCCTAAGCGTCGAGCTGCAAGCTATTAGCTGACGATCATCACTCATCAT
GGGAGCTGGAGATTTTTCTACGGATCTAGATTCAAGCTCAAATTCCAGCT
CATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAATCC
GAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTCCAT
GGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACCCCTCCA
CCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTTTTG
AAATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCTCACTCTCTC
TGACTCCTCCGGTAACTTGCCGGATTTGGGCTCCGGGGGCAACAATAAAT
TCATCTGGGAGTTCAACTTCCGGGACTTCGATGTCGCGACTGACGCCCAC
GCGCCGGATTCGATAGAGCTTCTGAGACTGCAGGGGATTGACTTTGAGCG
CAACAGGGAGGAAGGCGTTGACTCGGTTCGGTTCGCCGAGTTGATGATGT
CGTCGGGACTCGTCTGTAACGAGTCGGTGAGTTGGGTCACGTTCCACAGC
GCGTACGATTTCGGGTACCTGGTTAAGATCCTCACGCGCCGGAGCTTGCC
CAGTGGCCTAGACGAGTTTTTGACGGTCCTCAGGGTGTTTTTCGGTAACA
ACATTTATGACGTCAAACACATTATGCGGTTCTGTCAGAGCTTGTACGGG
GGGCTGGACCGAGTGGCTCGG
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