CF838921

Overview
NameCF838921
Unique NameCF838921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13632 contig Csv1_Contig13632:101..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838921 vs. ExPASy Swiss-Prot
Match: CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.005e-20
Identity = 70/205 (34.15%), Postives = 99/205 (48.29%), Query Frame = 3
Query:  210 LISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVA 818
            LI   +  Y FI++DTEFP  +         R   +     + Y  +  +VD   LIQ+GLTL D +G +     GG     WE NF DF V  DA    SIE LR  G+D  + REEG+    F   M         +++WVTFH +YD  YL+K  T  +LP   + F   +    G ++YD+K +   C+ L    GL+ +A
Sbjct:    3 LIEDCLRSYRFIAIDTEFPSTL---------RETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRI-----GGT----WEINFSDFGV-DDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLG-SVYDLKVMAGRCEGLSSRLGLETLA 187          
BLAST of CF838921 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.697e-19
Identity = 70/218 (32.11%), Postives = 96/218 (44.04%), Query Frame = 3
Query:  174 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILT-RRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVA 818
            EVW  N E E   I   +     I++DTEFPG +    +D S             Y+ +K NVD  +LIQ+G TL D  G              WE N  DFD         SI  L+  G++ ++ REEG+    F           +  ++WV F  +YD  YLVK LT  + LP   +EF   ++   G  ++DVK I   C  L    GL R+A
Sbjct:    8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDAS---------EEIRYRDMKFNVDNTHLIQLGFTLFDRRGFAK----------TWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIA 206          
BLAST of CF838921 vs. ExPASy Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.424e-19
Identity = 68/218 (31.19%), Postives = 96/218 (44.04%), Query Frame = 3
Query:  174 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILT-RRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVA 818
            EVW  N E E + I   +  +  I++DTEFPG +    +D S             Y+ +K NVD  +LIQ+G TL D  G              WE N  DF+         SI  L+  G++ ++  EEG+    F           +  ++WV F  +YD  YLVK LT  + LP   +EF   +    G  ++DVK I   C  L    GL R+A
Sbjct:    3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDAS---------EEIRYRDMKFNVDNTHLIQLGFTLFDRRGITK----------TWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIA 201          
The following BLAST results are available for this feature:
BLAST of CF838921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1H_ARATH2.005e-2034.15Putative CCR4-associated factor 1 homolog 8 OS=Ara... [more]
CAF1C_ARATH1.697e-1932.11Putative CCR4-associated factor 1 homolog 3 OS=Ara... [more]
CAF1D_ARATH8.424e-1931.19Putative CCR4-associated factor 1 homolog 4 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06P22_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838921 ID=CF838921; Name=CF838921; organism=Citrus sinensis; type=EST; length=821bp
CTCTCAAGCACCCTTTAAAGCCAGCAACAGTAAAGACTTTCAAATCTCAC
TCCCTAAGCGTCGAGCTGCAAGCTATTAGCTGACGATCATCACTCATCAT
GGGAGCTGGAGATTTTTCTACGGATCTAGATTCAAGCTCAAATTCCAGCT
CATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAATCC
GAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTCCAT
GGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACCCCTCCA
CCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTTTTG
AAATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCTCACTCTCTC
TGACTCCTCCGGTAACTTGCCGGATTTGGGCTCCGGGGGCAACAATAAAT
TCATCTGGGAGTTCAACTTCCGGGACTTCGATGTCGCGACTGACGCCCAC
GCGCCGGATTCGATAGAGCTTCTGAGACTGCAGGGGATTGACTTTGAGCG
CAACAGGGAGGAAGGCGTTGACTCGGTTCGGTTCGCCGAGTTGATGATGT
CGTCGGGACTCGTCTGTAACGAGTCGGTGAGTTGGGTCACGTTCCACAGC
GCGTACGATTTCGGGTACCTGGTTAAGATCCTCACGCGCCGGAGCTTGCC
CAGTGGCCTAGACGAGTTTTTGACGGTCCTCAGGGTGTTTTTCGGTAACA
ACATTTATGACGTCAAACACATTATGCGGTTCTGTCAGAGCTTGTACGGG
GGGCTGGACCGAGTGGCTCGG
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