CF931514

Overview
NameCF931514
Unique NameCF931514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length322
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.184e-17
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTTSRGEA------------NEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            AL+WAA+E+LPTY+R+R  IL+++  EA             EVDV  LG+ ERQ  I+++ +V + DN+RFL KL+NRIDRVGI+L  VE
Sbjct:   59 ALRWAAIERLPTYSRMRTAILSSAEEEAAAAAAGAGKQQYKEVDVRRLGVGERQEFIERVFRVAEEDNQRFLQKLRNRIDRVGIELPTVE 148          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.210e-16
Identity = 40/81 (49.38%), Postives = 62/81 (76.54%), Query Frame = 1
Query:   91 LKWAALEKLPTYNRLRKG----ILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            LKWAA+++LPTYNRLRKG    +++  R   +EVD+  LG Q+++ L++ ++KV + DNE+FL +L+NR DRVGI++ K+E
Sbjct:   58 LKWAAIDRLPTYNRLRKGMMKEVMSNGRVVHHEVDMTKLGNQDKKVLMESILKVVEDDNEQFLRRLRNRTDRVGIEIPKIE 138          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.747e-15
Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            ALKWAALEKLPT+ RLR  I+       + VDV  LG+ +RQ+ ID + KVT+ DNE+FL K +NRIDRV I L  VE
Sbjct:   39 ALKWAALEKLPTFARLRTTII---HPHEDLVDVTKLGVDDRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVE 113          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.980e-15
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTT--------SRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            ALKWAA+EKLPTY+RLR  ++          ++  + EVDV  L  ++RQ+ ID + KV + DNER L KL+NRIDRVGI L  VE
Sbjct:   52 ALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDVTKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVE 137          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: AB35G_ARATH (ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.892e-15
Identity = 46/87 (52.87%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTTSRGEAN---------EVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            ALKWA++EKLPTYNRLR  ++    GE +          VDV  L  +ERQ+ ID + KV + DNER L KL+NRIDRVGI L  VE
Sbjct:   50 ALKWASIEKLPTYNRLRTSLMP-ELGEDDVYGNQILNKAVDVTKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVE 135          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.639e-15
Identity = 40/81 (49.38%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   91 LKWAALEKLPTYNRLRKGIL--TTSRGEAN--EVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            L+WAALE+LPTY+RLRKG+L  T   G+    +VDV NL  +E++ L++ ++K  + DNE+FL +L+ R DRVGI++ K+E
Sbjct:   59 LRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIE 139          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.132e-14
Identity = 40/89 (44.94%), Postives = 61/89 (68.54%), Query Frame = 1
Query:   91 LKWAALEKLPTYNRLRKGILTT------------SRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            L+WAALEKLPTY+R+R+GIL              S  +A+EVD+ NL  +E + L++++ K  + DNERFL + ++R+D+VGI+L K+E
Sbjct:   51 LRWAALEKLPTYDRMRRGILRKAVDGGGDGEGAGSLFKADEVDIANLDPREGRELMERVFKAVEDDNERFLRRFRDRLDQVGIELPKIE 139          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.384e-12
Identity = 34/81 (41.98%), Postives = 59/81 (72.84%), Query Frame = 1
Query:   91 LKWAALEKLPTYNRLRKGIL--TTSRG--EANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            L+WAA+E+LPT++RLRKG+L  T++ G  E  ++D+  L  ++++ L++ ++   + DNE+FL  L+ R DRVGI++ K+E
Sbjct:   61 LRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIE 141          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.361e-12
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGIL------------TTSRGEA----NEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            AL+WAALE+LP+++RLR G++               RG       EVDV  L L +RQ  ++++  V + DNERFL KL+ RIDR GI +  VE
Sbjct:   69 ALRWAALERLPSFDRLRTGLMRADADSSGVGVGAVGRGRRWYAHREVDVRTLELAQRQAFVERVFHVAEEDNERFLKKLRARIDRAGIQMPTVE 162          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: AB32G_ARATH (ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.028e-12
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   91 LKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            L+WAAL++LPTY+R+R+GI     GE  E+ + NL   E++ L+D+LV   + D E+F  +++ R D V +   K+E
Sbjct:   25 LRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLEASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIE 101          
The following BLAST results are available for this feature:
BLAST of CF931514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PDR12_ORYSJ3.184e-1750.00Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]
PDR2_NICPL1.210e-1649.38Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
AB29G_ARATH1.747e-1556.41ABC transporter G family member 29 OS=Arabidopsis ... [more]
AB36G_ARATH2.980e-1551.16ABC transporter G family member 36 OS=Arabidopsis ... [more]
AB35G_ARATH3.892e-1552.87ABC transporter G family member 35 OS=Arabidopsis ... [more]
AB34G_ARATH6.639e-1549.38ABC transporter G family member 34 OS=Arabidopsis ... [more]
PDR5_ORYSJ1.132e-1444.94Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
AB39G_ARATH1.384e-1241.98ABC transporter G family member 39 OS=Arabidopsis ... [more]
PDR15_ORYSJ2.361e-1242.55Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
AB32G_ARATH4.028e-1240.26ABC transporter G family member 32 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionEST0588 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P228 similar to pleiotropic drug resistance-like protein (acc# BAB 92011), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931514 ID=CF931514; Name=CF931514; organism=Citrus sinensis; type=EST; length=322bp
ACTAGCTTGCGTCGGAGCGCTTCTAGATGGAACACAAATTCCATCGGTGC
ATTTTCGAGGTCTTCAAGGGAAGAAGACGATGAGGAGGCTCTAAAATGGG
CTGCTCTCGAGAAATTGCCTACCTATAACCGTTTGAGGAAGGGGATATTA
ACTACCTCACGAGGTGAAGCTAATGAAGTTGATGTTTACAACCTTGGGCT
GCAAGAAAGGCAGAGGTTGATTGATAAATTGGTTAAAGTTACTGATGTTG
ATAACGAGAGGTTCTTGTTGAAGCTCAAGAACCGTATTGATAGAGTTGGA
ATAGACCTTACAAAAGTCGAAG
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