CF931514

Overview
NameCF931514
Unique NameCF931514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length322
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: AB41G_ARATH (ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.611e-11
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:   94 KWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            +WA +E+LPT+ R+   +L T    ++ +DV  L   ER+ LI+KLVK  + DN R L K++ RID VGI+L  VE
Sbjct:   33 QWATVERLPTFKRVTTALLHTGDDSSDIIDVTKLEDAERRLLIEKLVKQIEADNLRLLRKIRKRIDEVGIELPTVE 108
[Close]
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: PDR3_TOBAC (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.596e-11
Identity = 39/113 (34.51%), Postives = 59/113 (52.21%), Query Frame = 1 
Query:    1 TSLRRSASRWNTNSIGAFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSRGEANEV------DVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            +S R  +S + +NS  +             L WAA+E+LPT++RLR  +     G    V      DV  LG  ER   I+K++K  + DN + L K++ RID+VG++L  VE
Sbjct:   26 SSFRGQSSSFRSNSALSASQKDDAVDEENMLAWAAIERLPTFDRLRSSLFEEINGNDANVKRKRVTDVTKLGALERHVFIEKMIKHIEHDNLQLLHKIRKRIDKVGVELPTVE 138
The following BLAST results are available for this feature:
BLAST of CF931514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
AB41G_ARATH2.611e-1144.74ABC transporter G family member 41 OS=Arabidopsis ... [more]
PDR3_TOBAC7.596e-1134.51Pleiotropic drug resistance protein 3 OS=Nicotiana... [more]

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Properties
Property NameValue
Genbank descriptionEST0588 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P228 similar to pleiotropic drug resistance-like protein (acc# BAB 92011), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931514 ID=CF931514; Name=CF931514; organism=Citrus sinensis; type=EST; length=322bp
ACTAGCTTGCGTCGGAGCGCTTCTAGATGGAACACAAATTCCATCGGTGC
ATTTTCGAGGTCTTCAAGGGAAGAAGACGATGAGGAGGCTCTAAAATGGG
CTGCTCTCGAGAAATTGCCTACCTATAACCGTTTGAGGAAGGGGATATTA
ACTACCTCACGAGGTGAAGCTAATGAAGTTGATGTTTACAACCTTGGGCT
GCAAGAAAGGCAGAGGTTGATTGATAAATTGGTTAAAGTTACTGATGTTG
ATAACGAGAGGTTCTTGTTGAAGCTCAAGAACCGTATTGATAGAGTTGGA
ATAGACCTTACAAAAGTCGAAG
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