CF931516

Overview
NameCF931516
Unique NameCF931516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF931516 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.122e-46
Identity = 95/154 (61.69%), Postives = 115/154 (74.68%), Query Frame = 3
Query:   33 MSMIPSFFGNRRSS-VFDPFSLDVWDFSSSSQFPQ----ETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXXRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 479
            MS+IP  FG+RRSS +FDPFS+DV+D      FP     ETSAF NTR+DWKETPEAHVFKADLPG             RVL+ISG+R +EKEDKND W RVERSSG F RRFRLPEN ++DQ+KAS++ GVLT+ +PK E KK +V++I+ISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPGTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
BLAST of CF931516 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.620e-46
Identity = 94/154 (61.04%), Postives = 114/154 (74.03%), Query Frame = 3
Query:   33 MSMIPSFFGNRRS-SVFDPFSLDVWDFSSSSQFPQ----ETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXXRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 479
            MS+IP  FG+RRS SVFDPFS+DV+D      F      ETSAF NTR+DWKETPEAHVFKADLPG             RVL+ISG+R +EKEDKNDTW+RVERSSG F RRFRLPEN ++DQ+KAS++ GVLT+ +PK E    +V++I+ISG
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPFKELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CF931516 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.175e-46
Identity = 94/155 (60.65%), Postives = 114/155 (73.55%), Query Frame = 3
Query:   33 MSMIPSFFGNRR---SSVFDPFSLDVWDFSSSSQFPQETS-AFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXXRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEA--KKSNVRAIQISG 479
            MS+IPSFFGN R   +++FDPFSLDVWD     QFP  +S A  N RVDWKET EAHVFKADLPG              VLKISG+R +EKE+K DTW+RVERSSG FSR+FRLPENV++DQ+KAS++ GVLT+ +PK E   KK+ V++I ISG
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPSSSSSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVTVPKVETNKKKAQVKSIDISG 155          
BLAST of CF931516 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.346e-45
Identity = 91/154 (59.09%), Postives = 113/154 (73.38%), Query Frame = 3
Query:   33 MSMIPSFFGNRRSS-VFDPFSLDVWDFSSSSQFPQ----ETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXXRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 479
            MS+IP  FG+RRSS +FDPFS+DV+D      FP     E+SAF NTR+DWKETPE HVFK DLPG             RVL+ISG+R +EKEDKND W+R+ERSSG F RRFRLPEN ++DQ+KAS++ GVLT+ +PK E KK  V++I+ISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPSTNSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CF931516 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.064e-45
Identity = 89/159 (55.97%), Postives = 114/159 (71.70%), Query Frame = 3
Query:   33 MSMIPSFFGNRRSSVFDPFSLDVWD----------FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXXRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 479
            MS+IPSFFG+RRS+V +PFSLD+WD            +SS+F +ET+AF NT +DWKETP+AHVFKADLPG             +VL+ISG+R  EKE+KN+ W+RVE SSG F RRFRLPEN  VD++KA ++ GVLT+ +PK E KK  V++I ISG
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CF931516 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.746e-43
Identity = 87/159 (54.72%), Postives = 112/159 (70.44%), Query Frame = 3
Query:   33 MSMIPSFFGNRRSSVFDPFSLDVWD-----FSSSSQFP-----QETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXXRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 479
            MS+IPS FG RRS+VFDPFS D+WD     F+ SS        ++ +AF N RVDWKETPEAHVFKADLPG              VL+ISG+R  E E+KND W+RVER+SG F RRFRLPEN +++++KA+++ GVLT+++PKA  KK  V++I ISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANASTARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of CF931516 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.892e-43
Identity = 86/142 (60.56%), Postives = 104/142 (73.24%), Query Frame = 3
Query:   81 DPFSLDVWD----------FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXXRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQIS 476
            DPFSLDVWD            S+S FPQE SAFV+TR+DWKETPEAHVFKADLPG             RVL+ISG+R +EKEDKND W+RVERSSG F RRFRLPEN ++DQ+KA+++ GVLT+ +PK E KK  V++I+IS
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          
BLAST of CF931516 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.892e-43
Identity = 89/153 (58.17%), Postives = 115/153 (75.16%), Query Frame = 3
Query:   33 MSMIPSFFGNRRSSVFDPFSLDVWD-FSS--SSQFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXXRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPK-AEAKKSNVRAIQISG 479
            MS+IPSFF ++RS++FDPFSLD WD F    S++  +ET+A VN R+DWKETPEAHV KADLPG             RVL+ISG+R  E+E+K+DTW+RVERSSG F RRFRLPEN ++D++KA ++ GVLT+++PK  E KK  V+AI ISG
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIISTEPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTVVVPKEEEEKKPMVKAIDISG 153          
BLAST of CF931516 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.423e-42
Identity = 87/146 (59.59%), Postives = 103/146 (70.55%), Query Frame = 3
Query:   63 RRSSVFDPFSLDVWDFSSS-------SQFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXXRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 479
            RRS+VFDPFSLD+WD   S       +    +T+AF N R+DWKETPE+HVFKADLPG              VL ISGQR  EKEDKND W+RVERSSG F RRFRLPEN +VDQ+KA ++ GVLT+ +PKAE KK  V+AI+ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CF931516 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.859e-42
Identity = 81/156 (51.92%), Postives = 110/156 (70.51%), Query Frame = 3
Query:   33 MSMIPSFFGNRRSSVFDPFSLDVWDFSSSSQFP-------QETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXXRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 479
            MS++PSFFG RR++VFDPFSLDVWD       P       ++ +AF N +VDW+ETPEAHVFKAD+PG              +L+ISG+R  E E+K+DTW+RVERSSG F RRFRLPEN +V+++KAS++ GVL++ +PK +  K  V+++ ISG
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
The following BLAST results are available for this feature:
BLAST of CF931516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HSP11_SOLPE2.122e-4661.6917.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP12_SOLPE3.620e-4661.0417.6 kDa class I heat shock protein OS=Solanum per... [more]
HS17A_ARATH6.175e-4660.6517.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HSP11_SOLLC2.346e-4559.0917.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP12_DAUCA3.064e-4555.9718.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS181_ARATH3.746e-4354.7218.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_MEDSA4.892e-4360.5618.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP11_HELAN4.892e-4358.1717.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS16A_ORYSJ1.423e-4259.5916.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP17_ARATH1.859e-4251.9217.4 kDa class I heat shock protein OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionEST0591 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P231 similar to class I small heat shock protein (acc# P02519), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931516 ID=CF931516; Name=CF931516; organism=Citrus sinensis; type=EST; length=536bp
GTGGGTTGTCAGCTTCTAAATTCTAATCGAAAATGTCGATGATTCCAAGC
TTCTTCGGGAACCGCCGCAGCAGTGTCTTCGATCCATTCTCTCTTGACGT
CTGGGATTTCTCTTCCTCATCTCAGTTCCCGCAAGAGACCTCGGCTTTCG
TCAACACCCGCGTCGACTGGAAGGAAACCCCGGAAGCCCACGTGTTCAAG
GCCGATCTGCCGGGGGTGAAGAAAGAGGAAGTGAAGGTCGAGGTCGACGA
TGACAGGGTGCTTAAGATAAGCGGGCAGAGGAAGATCGAGAAGGAAGACA
AGAACGACACGTGGTATCGCGTGGAGCGCAGCAGTGGAGCGTTCTCGCGG
AGATTCAGGCTACCGGAGAATGTGGAGGTGGACCAGATTAAGGCCTCAAT
AGACTGTGGTGTGCTCACTCTTATCATTCCTAAAGCGGAGGCCAAGAAAT
CCAATGTCAGGGCTATTCAAATTTCTGGCTGAATTCTCCTCTCTCCTGAT
AATAAGGCTTTGTTTGTTAATAATGATAATAAGGTC
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