CF931524

Overview
NameCF931524
Unique NameCF931524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length284
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13032 contig Csv1_Contig13032:121..406. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF931524 vs. ExPASy Swiss-Prot
Match: SNF1_CANAL (Carbon catabolite-derepressing protein kinase OS=Candida albicans GN=SNF1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.341e-11
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 3
Query:    3 ENTLLDGSAAPRLKICDFGYSKSSVLHSRPKSTVGTPAYI-APEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPKNFMK 257
            EN LLD      +KI DFG S      +  K++ G+P Y+ APEV+S + Y G   DVWS GV LYVML G  PF+D+  P  F K
Sbjct:  179 ENLLLDDQL--NVKIADFGLSNIMTDGNFLKTSCGSPNYMPAPEVISGKLYAGPEVDVWSAGVILYVMLCGRLPFDDEFIPALFKK 262          
BLAST of CF931524 vs. ExPASy Swiss-Prot
Match: PP395_ARATH (Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.669e-11
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 3
Query:    3 ENTLLDGSAAPRLKICDFGY---SKSSVLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFED 230
            EN LLD  A   LK+ +FG    S+ +       +  G P Y APEVL+ + YDG  AD+WSCGV L+V+L G  PFED
Sbjct:  140 ENLLLD--AQENLKVAEFGLIALSQQAGGDGLRHTACGNPDYAAPEVLNDQGYDGAKADLWSCGVILFVLLAGYLPFED 216          
BLAST of CF931524 vs. ExPASy Swiss-Prot
Match: TSSK2_HUMAN (Testis-specific serine/threonine-protein kinase 2 OS=Homo sapiens GN=TSSK2 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 3
Query:    3 ENTLLDGSAAPRLKICDFGYSKSSVLHSR-----PKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPKNFMKTIQK 269
            EN LLD      +K+ DFG+SK  +  S       K+  G+ AY APEVL    Y  K+ D+WS GV LY+M+ G+ P++D D  K  M  IQK
Sbjct:  140 ENLLLDKDF--NIKLSDFGFSKRCLRDSNGRIILSKTFCGSAAYAAPEVLQSIPYQPKVYDIWSLGVILYIMVCGSMPYDDSDIRK--MLRIQK 229          
The following BLAST results are available for this feature:
BLAST of CF931524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SNF1_CANAL4.341e-1146.51Carbon catabolite-derepressing protein kinase OS=C... [more]
PP395_ARATH5.669e-1146.84Pentatricopeptide repeat-containing protein At5g21... [more]
TSSK2_HUMAN7.404e-1142.55Testis-specific serine/threonine-protein kinase 2 ... [more]

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Properties
Property NameValue
Genbank descriptionEST0603 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P295 similar to serine/threonine protein kinase (acc# S60611), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931524 ID=CF931524; Name=CF931524; organism=Citrus sinensis; type=EST; length=284bp
TGGAAAATACCCTATTAGATGGAAGTGCTGCCCCACGCCTGAAAATATGT
GACTTTGGTTACTCTAAGTCATCTGTATTGCATTCAAGACCCAAATCAAC
AGTTGGAACTCCGGCTTATATAGCACCAGAAGTTCTTTCTCGGAGAGAAT
ATGATGGAAAATTAGCAGATGTATGGTCATGTGGGGTCACTCTCTATGTT
ATGCTAGTTGGTGCATACCCTTTTGAAGACCAAGATGACCCTAAAAATTT
CATGAAAACAATTCAGAAAATAATGGCAGTTCAG
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