CK739458

Overview
NameCK739458
Unique NameCK739458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 51/103 (49.51%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149
[Close]
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 51/103 (49.51%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
[Close]
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   45 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 143
[Close]
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 51/103 (49.51%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
[Close]
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
[Close]
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.032e-20
Identity = 51/103 (49.51%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L Y G
Sbjct:   48 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLG 146
[Close]
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.032e-20
Identity = 51/103 (49.51%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P  F+K +  E+IH RW MLGA G + PE F + G   G EAVWFK G+ +     L+Y G
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLG 148
[Close]
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.004e-20
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLG 147
[Close]
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.004e-20
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G
Sbjct:   21 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLG 119
[Close]
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.004e-20
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
The following BLAST results are available for this feature:
BLAST of CK739458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB24_TOBAC6.052e-2149.51Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB22_TOBAC6.052e-2149.51Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ6.052e-2150.49Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_TOBAC6.052e-2149.51Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_ORYSJ6.052e-2150.49Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_HORVU1.032e-2049.51Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PETSP1.032e-2049.51Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB26_PETSP3.004e-2047.57Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC3.004e-2047.57Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC3.004e-2047.57Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5920 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE56F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739458 ID=CK739458; Name=CK739458; organism=Citrus sinensis; type=EST; length=574bp
CAAAGAAGCAGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATC
GTCCACTCCTGCTGCCTCCATTGGAGCTAAGGAGATGCTTGGCAACCCTC
TCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCT
TCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCC
TGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCA
AGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGAC
AGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGG
TTACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATC
AGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGT
TTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGA
AGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGA
ACTACTTCGGAAAGAACATCCCAA
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