CK739458

Overview
NameCK739458
Unique NameCK739458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLG 148          
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLG 148          
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.491e-19
Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F++ +A E+IH RWAMLGA G + PE   K+      E VWFK G+ +     L+Y G
Sbjct:   50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLG 149          
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.491e-19
Identity = 49/103 (47.57%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   49 WYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147          
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.796e-18
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  307 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+ WAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G
Sbjct:    5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 88          
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.543e-16
Identity = 46/103 (44.66%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYG DR ++L  G L  S  P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWA+    G + PE   + G   G E VWFK G+ +     L++ G
Sbjct:   48 WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPG 146          
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.543e-16
Identity = 45/105 (42.86%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  250 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            ++YGPD       G   + + P   TGE PGDYG+D  GLS  P+ F +Y+  ELIHAR  +LGA G + PE   ++ G   G  A+WFK GA +     LNY G
Sbjct:   56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLG 156          
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.862e-16
Identity = 43/85 (50.59%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  307 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+R AM  A G I PE  +  G   G EAVWFK GA +     L+Y G
Sbjct:   68 EWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGAQIFSEGGLDYLG 151          
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 45/103 (43.69%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  253 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 561
            WYGPDR  +L        E P YLTGE          GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 138          
BLAST of CK739458 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13
Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  262 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 522
            PDR ++ P      S  PE+L G +PGD+G+DP GL   P+        EL+H+RWAMLGAAG  IPE   K G    P   W+  G
Sbjct:   63 PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WYTAG 142          
The following BLAST results are available for this feature:
BLAST of CK739458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB22_ARATH6.692e-2047.57Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH6.692e-2047.57Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_HORVU1.491e-1945.63Chlorophyll a-b binding protein of LHCII type III,... [more]
CB21_SINAL1.491e-1947.57Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_CUCSA4.796e-1850.59Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB48_MAIZE1.543e-1644.66Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_DUNSA1.543e-1642.86Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO5.862e-1650.59Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB22_SOYBN1.444e-1443.69Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB12_PETHY1.596e-1343.68Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5920 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE56F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739458 ID=CK739458; Name=CK739458; organism=Citrus sinensis; type=EST; length=574bp
CAAAGAAGCAGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATC
GTCCACTCCTGCTGCCTCCATTGGAGCTAAGGAGATGCTTGGCAACCCTC
TCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCT
TCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCC
TGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCA
AGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGAC
AGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGG
TTACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATC
AGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGT
TTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGA
AGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGA
ACTACTTCGGAAAGAACATCCCAA
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