CK739468

Overview
NameCK739468
Unique NameCK739468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739468 vs. ExPASy Swiss-Prot
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 3 
Query:  138 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 401
            +K  ++K  VVVDF A WCGPCR IAP L +LA +    L + KV+ D+    A+   ++ +PT +  K+G+ V ++VG++ E + + I
Sbjct:   14 EKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFKDGREVGRLVGARPEAMYREI 102
[Close]
BLAST of CK739468 vs. ExPASy Swiss-Prot
Match: THIO1_DROME (Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.725e-11
Identity = 30/100 (30.00%), Postives = 65/100 (65.00%), Query Frame = 3 
Query:  111 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 407
            T+  ++++++ +++  +L+V+DF A+WCGPC+ +   +  LA+K  +  + LK+DVD+ + +   + V +MPTF+FL++ + +    G+ + +L   +AK
Sbjct:    6 TMNDYHKRIEAADD--KLIVLDFYATWCGPCKEMESTVKSLARKYSSKAVVLKIDVDKFEELTERYKVRSMPTFVFLRQNRRLASFAGADEHKLTNMMAK 103
The following BLAST results are available for this feature:
BLAST of CK739468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
THIO_CHLAA7.446e-1138.20Thioredoxin OS=Chloroflexus aurantiacus (strain AT... [more]
THIO1_DROME9.725e-1130.00Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5930 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE56G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739468 ID=CK739468; Name=CK739468; organism=Citrus sinensis; type=EST; length=512bp
CAAGAAAGCGAGGGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGG
TAATAACCGCGGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCAT
CGGGTGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATG
AAACCAAACAGCTGGTTGTTGTTGATTTCACTGCTTCGTGGTGCGGACCA
TGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAA
TGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTG
ACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAG
ATTGTGGACAAGGTGGTTGGATCAAAGAAAGAGGAACTGCAGCAGACTAT
TGCCAAGCATCTGGCAACTGCCTCTGCCTAATAAGTTATAACTATCCTCC
TGCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGT
AATTTACTTATT
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