CK739529

Overview
NameCK739529
Unique NameCK739529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_SALTI (Iron-binding protein iscA OS=Salmonella typhi GN=iscA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_SALSV (Iron-binding protein iscA OS=Salmonella schwarzengrund (strain CVM19633) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_SALPK (Iron-binding protein iscA OS=Salmonella paratyphi A (strain AKU_12601) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_SALPC (Iron-binding protein iscA OS=Salmonella paratyphi C (strain RKS4594) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_SALPB (Iron-binding protein iscA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_SALPA (Iron-binding protein iscA OS=Salmonella paratyphi A GN=iscA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_SALHS (Iron-binding protein iscA OS=Salmonella heidelberg (strain SL476) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_SALG2 (Iron-binding protein iscA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_SALEP (Iron-binding protein iscA OS=Salmonella enteritidis PT4 (strain P125109) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_SALDC (Iron-binding protein iscA OS=Salmonella dublin (strain CT_02021853) GN=iscA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105
The following BLAST results are available for this feature:
BLAST of CK739529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
ISCA_SALTI2.805e-1952.50Iron-binding protein iscA OS=Salmonella typhi GN=i... [more]
ISCA_SALSV2.805e-1952.50Iron-binding protein iscA OS=Salmonella schwarzeng... [more]
ISCA_SALPK2.805e-1952.50Iron-binding protein iscA OS=Salmonella paratyphi ... [more]
ISCA_SALPC2.805e-1952.50Iron-binding protein iscA OS=Salmonella paratyphi ... [more]
ISCA_SALPB2.805e-1952.50Iron-binding protein iscA OS=Salmonella paratyphi ... [more]
ISCA_SALPA2.805e-1952.50Iron-binding protein iscA OS=Salmonella paratyphi ... [more]
ISCA_SALHS2.805e-1952.50Iron-binding protein iscA OS=Salmonella heidelberg... [more]
ISCA_SALG22.805e-1952.50Iron-binding protein iscA OS=Salmonella gallinarum... [more]
ISCA_SALEP2.805e-1952.50Iron-binding protein iscA OS=Salmonella enteritidi... [more]
ISCA_SALDC2.805e-1952.50Iron-binding protein iscA OS=Salmonella dublin (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6367 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739529 ID=CK739529; Name=CK739529; organism=Citrus sinensis; type=EST; length=532bp
GTCCTTTCCTCCGTCTTGGCGTTAAGGCTCGCGGCTGCAACGGCTTATCC
TACACCCTCAATTATGCAGACGAGAAATCAAAGTTCGATGAGGTGGTTGA
GGACAAGGGCGTTAAGATATTAATTGATCCGAAGGCACTGATGCATGTTA
TAGGAACCAAGATGGATTTCGTAGATGACAAACTCAGATCTGAGTTTGTA
TTCATCAACCCCAACTCGAAAGGGCAGTGTGGTTGTGGAGAGTCCTTTAT
GACAACAAGCAGTGCGGAAGCTGCTAAGCGAGGTCGTAGTTAATGATTAT
CATCTTAACTTCATTTTATCTCGTGGCGATCTTGCATATTTCATGCTGTC
CAAGCAACCTTTTGATTCCCACTTACACTGTTACTTATGTACGTAGACTA
TAACATAGATCAGAATTGTGGCTTACGCTCATGTAAATAATGGTGATAAT
AGTATGGTAATTCACTGTGGTTTGGTTTAAACATCAAAATCTTGATTCAA
GTATTTAGAGTTTGCCTTTTCCAAACTCTATT
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