CK739529

Overview
NameCK739529
Unique NameCK739529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: Y4VC_RHISN (Uncharacterized protein y4vC OS=Rhizobium sp. (strain NGR234) GN=NGR_a01210 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ V+A GC+G  Y L    E    D V+E  GVK+ +D  +  HV G  +DF      + F+F NPN++  C CG+SF
Sbjct:   26 LRIKVEAGGCSGFKYHLGLDSESRDGDAVIEAGGVKVYVDSASQPHVSGMTVDFTTGVDSAGFIFDNPNARENCACGKSF 105          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_POLSQ (Putative iron--sulfur cluster insertion protein erpA OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=erpA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 29/80 (36.25%), Postives = 48/80 (60.00%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ V+  GC+G  Y   + D  ++ D + E  GV +L+D  +  +++G ++D+ +D   S+FV  NPN+   CGCG SF
Sbjct:   43 LRVFVQGGGCSGFQYGFTFDDAVNEDDTLFEKNGVTLLVDSMSFQYLVGAEIDYKEDINGSQFVIKNPNATTTCGCGSSF 122          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_HAEPS (Iron--sulfur cluster insertion protein erpA OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=erpA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ +   GC+G  Y   + D+ ++ D  +E+  V ++IDP +L ++IG  +D+V+    S FV  NPN+   CGCG SF
Sbjct:   32 LRVYITGGGCSGFQYGFTFDDKLNEGDLTIENLDVALVIDPMSLQYLIGATIDYVEGLDGSRFVVQNPNASSTCGCGASF 111          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_AZOVD (Iron--sulfur cluster insertion protein erpA OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=erpA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ V   GC+G  Y   + ++ ++ D +VE +GV +++DP +  ++ G ++D+ +    S FV  NPN+   CGCG+SF
Sbjct:   35 LRVFVTGGGCSGFQYGFTFDEDVAEDDTIVEREGVSLVVDPMSFQYLAGAEVDYQEGLEGSRFVIKNPNAATTCGCGQSF 114          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_AERS4 (Iron-sulfur cluster insertion protein erpA OS=Aeromonas salmonicida (strain A449) GN=erpA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 29/80 (36.25%), Postives = 47/80 (58.75%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ +   GC+G  Y   + ++ ++ D VVE  GV ++IDP +L +++G  +D+ +    S F   NPN+   CGCG SF
Sbjct:   35 LRVYITGGGCSGFQYGFTFDEKINEGDTVVEKSGVTMVIDPMSLQYLVGGSVDYTEGLEGSRFTVTNPNASTTCGCGSSF 114          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_VIBFM (Iron--sulfur cluster insertion protein erpA OS=Vibrio fischeri (strain MJ11) GN=erpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 28/80 (35.00%), Postives = 48/80 (60.00%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ +   GC+G  Y   + ++ ++ D  +E+ GV +++DP +L ++IG K+D+ +    S F   NPN+   CGCG SF
Sbjct:   32 LRVYITGGGCSGFQYGFTFDEDVNEGDMTIENDGVTLVVDPMSLQYLIGGKVDYTEGLEGSRFFIDNPNATTTCGCGASF 111          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_VIBF1 (Iron-sulfur cluster insertion protein erpA OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=erpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 28/80 (35.00%), Postives = 48/80 (60.00%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ +   GC+G  Y   + ++ ++ D  +E+ GV +++DP +L ++IG K+D+ +    S F   NPN+   CGCG SF
Sbjct:   32 LRVYITGGGCSGFQYGFTFDEDVNEGDMTIENDGVTLVVDPMSLQYLIGGKVDYTEGLEGSRFFIDNPNATTTCGCGASF 111          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_BURPP (Putative iron--sulfur cluster insertion protein erpA OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=erpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ V+  GC+G  Y   + +  ++ D V+   GV++LID  +  +++G ++D+ DD   ++FV  NPN+   CGCG SF
Sbjct:   40 LRVFVQGGGCSGFQYGFTFDEAVNEDDTVMNKSGVQLLIDSMSYQYLVGAEIDYKDDINGAQFVIKNPNATTTCGCGSSF 119          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_AERHH (Iron-sulfur cluster insertion protein erpA OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=erpA PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 29/80 (36.25%), Postives = 47/80 (58.75%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ +   GC+G  Y   + ++ ++ D VVE  GV ++IDP +L +++G  +D+ +    S F   NPN+   CGCG SF
Sbjct:   35 LRVYITGGGCSGFQYGFTFDEKINEGDTVVEKSGVTMVIDPMSLQYLVGGSVDYTEGLEGSRFTVTNPNATTTCGCGSSF 114          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA1_BURXL (Putative iron-sulfur cluster insertion protein erpA 1 OS=Burkholderia xenovorans (strain LB400) GN=erpA1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ V+  GC+G  Y   + +  ++ D V+   GV++LID  +  +++G ++D+ DD   ++FV  NPN+   CGCG SF
Sbjct:   40 LRVFVQGGGCSGFQYGFTFDEAVNEDDTVMNKSGVQLLIDSMSYQYLVGAEIDYKDDINGAQFVIKNPNATTTCGCGSSF 119          
The following BLAST results are available for this feature:
BLAST of CK739529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
Y4VC_RHISN6.262e-1140.00Uncharacterized protein y4vC OS=Rhizobium sp. (str... [more]
ERPA_POLSQ6.262e-1136.25Putative iron--sulfur cluster insertion protein er... [more]
ERPA_HAEPS6.262e-1137.50Iron--sulfur cluster insertion protein erpA OS=Hae... [more]
ERPA_AZOVD6.262e-1135.00Iron--sulfur cluster insertion protein erpA OS=Azo... [more]
ERPA_AERS46.262e-1136.25Iron-sulfur cluster insertion protein erpA OS=Aero... [more]
ERPA_VIBFM8.179e-1135.00Iron--sulfur cluster insertion protein erpA OS=Vib... [more]
ERPA_VIBF18.179e-1135.00Iron-sulfur cluster insertion protein erpA OS=Vibr... [more]
ERPA_BURPP8.179e-1136.25Putative iron--sulfur cluster insertion protein er... [more]
ERPA_AERHH8.179e-1136.25Iron-sulfur cluster insertion protein erpA OS=Aero... [more]
ERPA1_BURXL8.179e-1136.25Putative iron-sulfur cluster insertion protein erp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6367 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739529 ID=CK739529; Name=CK739529; organism=Citrus sinensis; type=EST; length=532bp
GTCCTTTCCTCCGTCTTGGCGTTAAGGCTCGCGGCTGCAACGGCTTATCC
TACACCCTCAATTATGCAGACGAGAAATCAAAGTTCGATGAGGTGGTTGA
GGACAAGGGCGTTAAGATATTAATTGATCCGAAGGCACTGATGCATGTTA
TAGGAACCAAGATGGATTTCGTAGATGACAAACTCAGATCTGAGTTTGTA
TTCATCAACCCCAACTCGAAAGGGCAGTGTGGTTGTGGAGAGTCCTTTAT
GACAACAAGCAGTGCGGAAGCTGCTAAGCGAGGTCGTAGTTAATGATTAT
CATCTTAACTTCATTTTATCTCGTGGCGATCTTGCATATTTCATGCTGTC
CAAGCAACCTTTTGATTCCCACTTACACTGTTACTTATGTACGTAGACTA
TAACATAGATCAGAATTGTGGCTTACGCTCATGTAAATAATGGTGATAAT
AGTATGGTAATTCACTGTGGTTTGGTTTAAACATCAAAATCTTGATTCAA
GTATTTAGAGTTTGCCTTTTCCAAACTCTATT
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