CK739529

Overview
NameCK739529
Unique NameCK739529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_YERPP (Iron-binding protein iscA OS=Yersinia pestis (strain Pestoides F) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.066e-18
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_YERPN (Iron-binding protein iscA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.066e-18
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_YERPG (Iron-binding protein iscA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.066e-18
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_YERPE (Iron-binding protein iscA OS=Yersinia pestis GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.066e-18
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_YERPB (Iron-binding protein iscA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.066e-18
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_YERPA (Iron-binding protein iscA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.066e-18
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_YERP3 (Iron-binding protein iscA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.066e-18
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + DE +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_PHOLL (Iron-binding protein iscA OS=Photorhabdus luminescens subsp. laumondii GN=iscA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.392e-18
Identity = 40/80 (50.00%), Postives = 59/80 (73.75%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L +AD  ++ D V EDKGVK+++D K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYLLEFADMINEDDTVFEDKGVKVIVDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSSECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_ENTS8 (Iron-binding protein iscA OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.392e-18
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + D     D V EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDAPQPEDTVFEDKGVKVVVDGKSLQFLNGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105
[Close]
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_PROMH (Iron-binding protein iscA OS=Proteus mirabilis (strain HI4320) GN=iscA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.818e-18
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3 
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L +AD  +  D V EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFADVINDEDTVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVANECGCGESF 105
The following BLAST results are available for this feature:
BLAST of CK739529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
ISCA_YERPP1.066e-1851.25Iron-binding protein iscA OS=Yersinia pestis (stra... [more]
ISCA_YERPN1.066e-1851.25Iron-binding protein iscA OS=Yersinia pestis bv. A... [more]
ISCA_YERPG1.066e-1851.25Iron-binding protein iscA OS=Yersinia pestis bv. A... [more]
ISCA_YERPE1.066e-1851.25Iron-binding protein iscA OS=Yersinia pestis GN=is... [more]
ISCA_YERPB1.066e-1851.25Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_YERPA1.066e-1851.25Iron-binding protein iscA OS=Yersinia pestis bv. A... [more]
ISCA_YERP31.066e-1851.25Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_PHOLL1.392e-1850.00Iron-binding protein iscA OS=Photorhabdus luminesc... [more]
ISCA_ENTS81.392e-1851.25Iron-binding protein iscA OS=Enterobacter sakazaki... [more]
ISCA_PROMH1.818e-1851.25Iron-binding protein iscA OS=Proteus mirabilis (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6367 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739529 ID=CK739529; Name=CK739529; organism=Citrus sinensis; type=EST; length=532bp
GTCCTTTCCTCCGTCTTGGCGTTAAGGCTCGCGGCTGCAACGGCTTATCC
TACACCCTCAATTATGCAGACGAGAAATCAAAGTTCGATGAGGTGGTTGA
GGACAAGGGCGTTAAGATATTAATTGATCCGAAGGCACTGATGCATGTTA
TAGGAACCAAGATGGATTTCGTAGATGACAAACTCAGATCTGAGTTTGTA
TTCATCAACCCCAACTCGAAAGGGCAGTGTGGTTGTGGAGAGTCCTTTAT
GACAACAAGCAGTGCGGAAGCTGCTAAGCGAGGTCGTAGTTAATGATTAT
CATCTTAACTTCATTTTATCTCGTGGCGATCTTGCATATTTCATGCTGTC
CAAGCAACCTTTTGATTCCCACTTACACTGTTACTTATGTACGTAGACTA
TAACATAGATCAGAATTGTGGCTTACGCTCATGTAAATAATGGTGATAAT
AGTATGGTAATTCACTGTGGTTTGGTTTAAACATCAAAATCTTGATTCAA
GTATTTAGAGTTTGCCTTTTCCAAACTCTATT
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