CK739529

Overview
NameCK739529
Unique NameCK739529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_SERP5 (Iron-binding protein iscA OS=Serratia proteamaculans (strain 568) GN=iscA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.101e-18
Identity = 40/80 (50.00%), Postives = 58/80 (72.50%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGV+  GC+G++Y L + D+ +  D V E+KGVK++ID K+L+++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:   26 LRLGVRTSGCSGMAYVLEFVDDMNDDDIVFENKGVKVIIDGKSLVYLDGTELDFVKEGLNEGFKFNNPNVSSECGCGESF 105          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ISCA_HAEIN (Iron-binding protein iscA OS=Haemophilus influenzae GN=iscA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.428e-17
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRLGVK  GC+GL+Y L + D  +  D+V E  GV I++DPK+L+++ G ++D+V + L   F + NPN K  CGCGESF
Sbjct:   26 LRLGVKTSGCSGLAYVLEFVDVLNSEDQVFEQYGVNIIVDPKSLVYLNGIELDYVKEGLNEGFKYNNPNVKESCGCGESF 105          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: YUTM_BACSU (Uncharacterized protein yutM OS=Bacillus subtilis GN=yutM PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.473e-15
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    6 FLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSA 266
            FLR+GVK  GC+GLSY + +  EKS+ D V +  G+ +L+D ++L  + GT +D+    L   F   NPN+   CGCG SF T ++A
Sbjct:   28 FLRVGVKGGGCSGLSYGMGFEHEKSESDSVFDQHGITVLVDKESLDIMNGTVIDYKQSMLGGGFTIDNPNAIASCGCGSSFRTATNA 114          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: HESB_PLEBO (Protein hesB OS=Plectonema boryanum GN=hesB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.032e-13
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKG-VKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSAEAA 275
            +R+GV   GC+G  YTL+ A+E  K D+V+E +G VKI IDP+A   + G  +DFV+  + S F F NPN+   CGCG+SF       AA
Sbjct:   29 IRVGVSDGGCSGYQYTLDIANEP-KPDDVIEQQGRVKIYIDPQAAALINGVVVDFVEGLMDSGFKFSNPNATDTCGCGQSFQAGDCTPAA 117          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: Y1857_AQUAE (Protein aq_1857 OS=Aquifex aeolicus GN=aq_1857 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.300e-13
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 3
Query:    3 PFLRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            P LR+ V   GC+G  Y + + D   + D V E  GVK++IDP ++ +V G ++D+V D +   F   NPN+ G CGCG SF
Sbjct:   32 PILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSF 113          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_THICR (Iron-sulfur cluster insertion protein erpA OS=Thiomicrospira crunogena (strain XCL-2) GN=erpA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.003e-13
Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ +   GC+G  Y   + + +++ D VVE  GVK++IDP +  +++G K+D+++D   + FV  NPN+   CGCG SF
Sbjct:   32 LRVYITGGGCSGFQYGFTFDESQAEDDTVVEKDGVKLMIDPMSFQYLMGAKIDYLEDLQGARFVIENPNASTTCGCGSSF 111          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: Y1755_BRAJA (Uncharacterized protein blr1755 OS=Bradyrhizobium japonicum GN=blr1755 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ ++A GCNG  Y +  ADE    D V++  G+K+ +D K+  H+ GT +DFV     S F F NPN+   C CG+SF
Sbjct:   26 LRVMIEAGGCNGFKYKMGIADEPKPDDTVIDCDGLKVFVDSKSREHLAGTTIDFVLAPESSGFTFHNPNAATNCSCGKSF 105          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: ERPA_RUTMC (Iron-sulfur cluster insertion protein erpA OS=Ruthia magnifica subsp. Calyptogena magnifica GN=erpA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LR+ +   GC+G SY  N+ +   + D  VE+ GV++++DP +  ++IG  +D+++D   + F+  NPN+K  CGCG SF
Sbjct:   36 LRVYITGGGCSGFSYGFNFDETYKEGDSSVENNGVQLVVDPMSYQYLIGATVDYLEDLQGARFIIHNPNAKTTCGCGSSF 115          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: YNIU_RHOSH (Uncharacterized protein in nifU 5'region OS=Rhodobacter sphaeroides PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.141e-12
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            LRL V++ GC GL Y ++    ++  D VVE +G+++LIDP++  ++ G  +DFV     + FVF NPN+KG CGCG+SF
Sbjct:   26 LRLMVQSGGCAGLKYGMSLELTEAPDDLVVEAEGLRVLIDPQSGTYLNGVTIDFVTSLEGTGFVFDNPNAKGGCGCGKSF 105          
BLAST of CK739529 vs. ExPASy Swiss-Prot
Match: SUFA_ECOLI (Protein sufA OS=Escherichia coli (strain K12) GN=sufA PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.141e-12
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 3
Query:    9 LRLGVKARGCNGLSYTLNYADEKSKFDEVVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 248
            +RLGVK  GC G  Y L+   E  K D + E  G K+ +  +A+  + GT++DFV + L   F F NP ++ +CGCGESF
Sbjct:   41 VRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESF 120          
The following BLAST results are available for this feature:
BLAST of CK739529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
ISCA_SERP53.101e-1850.00Iron-binding protein iscA OS=Serratia proteamacula... [more]
ISCA_HAEIN3.428e-1748.75Iron-binding protein iscA OS=Haemophilus influenza... [more]
YUTM_BACSU5.473e-1542.53Uncharacterized protein yutM OS=Bacillus subtilis ... [more]
HESB_PLEBO1.032e-1345.56Protein hesB OS=Plectonema boryanum GN=hesB PE=3 S... [more]
Y1857_AQUAE2.300e-1341.46Protein aq_1857 OS=Aquifex aeolicus GN=aq_1857 PE=... [more]
ERPA_THICR3.003e-1338.75Iron-sulfur cluster insertion protein erpA OS=Thio... [more]
Y1755_BRAJA6.691e-1342.50Uncharacterized protein blr1755 OS=Bradyrhizobium ... [more]
ERPA_RUTMC6.691e-1337.50Iron-sulfur cluster insertion protein erpA OS=Ruth... [more]
YNIU_RHOSH1.141e-1245.00Uncharacterized protein in nifU 5'region OS=Rhodob... [more]
SUFA_ECOLI1.141e-1242.50Protein sufA OS=Escherichia coli (strain K12) GN=s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6367 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739529 ID=CK739529; Name=CK739529; organism=Citrus sinensis; type=EST; length=532bp
GTCCTTTCCTCCGTCTTGGCGTTAAGGCTCGCGGCTGCAACGGCTTATCC
TACACCCTCAATTATGCAGACGAGAAATCAAAGTTCGATGAGGTGGTTGA
GGACAAGGGCGTTAAGATATTAATTGATCCGAAGGCACTGATGCATGTTA
TAGGAACCAAGATGGATTTCGTAGATGACAAACTCAGATCTGAGTTTGTA
TTCATCAACCCCAACTCGAAAGGGCAGTGTGGTTGTGGAGAGTCCTTTAT
GACAACAAGCAGTGCGGAAGCTGCTAAGCGAGGTCGTAGTTAATGATTAT
CATCTTAACTTCATTTTATCTCGTGGCGATCTTGCATATTTCATGCTGTC
CAAGCAACCTTTTGATTCCCACTTACACTGTTACTTATGTACGTAGACTA
TAACATAGATCAGAATTGTGGCTTACGCTCATGTAAATAATGGTGATAAT
AGTATGGTAATTCACTGTGGTTTGGTTTAAACATCAAAATCTTGATTCAA
GTATTTAGAGTTTGCCTTTTCCAAACTCTATT
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