CK739562

Overview
NameCK739562
Unique NameCK739562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METJA (30S ribosomal protein S4P OS=Methanocaldococcus jannaschii GN=rps4p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.908e-19
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 3
Query:   18 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            R + KT++ P  P+ KER++ E  L  +YGLR KRE+W+ +  L + R  AR L++  ++  +   E   L   + +YG L+     LD VL+LTVE+ LERRLQTLVF+ G+A++   A
Sbjct:    6 RRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQA 123          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.294e-18
Identity = 49/124 (39.52%), Postives = 80/124 (64.52%), Query Frame = 3
Query:   18 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLT----LDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            + + K +  P  P++K RL+ E++LV +YGLR KRELWR Q  L + R  ARDLL       ++      + + +++++++ G L E+   LD +L L+VE+FLERRLQT+V++ G+A++I  A
Sbjct:    5 KRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQA 127          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_THEVO (30S ribosomal protein S4P OS=Thermoplasma volcanium GN=rps4p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.207e-18
Identity = 51/115 (44.35%), Postives = 76/115 (66.09%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 365
            K +  PR P+EK+R+D E +++ +YGL+ KRE+WR +  LS IR+ AR L   L   + N ++  + E +++R+ RY  L +    LD VL+LTVEN L+RRLQT+VFK  +A S
Sbjct:    9 KKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQK--QLERMIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALS 120          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.207e-18
Identity = 54/116 (46.55%), Postives = 71/116 (61.21%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  P+ KERLD E  L  +Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R+HR G L  +   LD VL+LTVE+ LERRLQTLV+K G+A++I  A
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLHRLGLLP-ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQA 121          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.207e-18
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P+ P+ KERL+ E  L+G YGLR K+ELW+ +    R R+ AR LL L  +  R       L+  ++R G ++     +D VL +  E  LERRLQT+V+K G+AK+I+ A
Sbjct:    9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRRE--ASRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQA 122          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_CALMQ (30S ribosomal protein S4P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.883e-18
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 3
Query:   42 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEA---LLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            KP+R +  + L +ELRL+GEYGLR K+ELW  +  L  I++ AR++L+     P  I  GEA   L  R+ R G + +    LD VLAL V   LERRLQTLV++ GMA+SIH A
Sbjct:   15 KPKRLWNSDLLMSELRLIGEYGLRNKKELWLARALLRSIKHRAREILSA----PMEI-RGEAEKRLKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEA 124          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.765e-18
Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            KT+ +PR+P+E +R+  E+ L+  YGLR KRELW+ +  L + R   R LL    +   R   E  A++ R+ R+G L++  + LD +L+L + + LERRLQT V++ G+A +I  A
Sbjct:    9 KTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQA 124          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.917e-18
Identity = 46/116 (39.66%), Postives = 73/116 (62.93%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            + ++ P  P+ +  L+ E  L+G+YGLR KRELW  Q  + + R+ AR LL L      R    + L+++++R G +E+    LD +L L  EN+LERRLQT+V+K G+A++I+ A
Sbjct:    9 RKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQA 122          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_PYRAR (30S ribosomal protein S4P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.917e-18
Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = 3
Query:   42 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            KP++ + K+ L  EL+L+GEYGLR KRELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQT+V++ G+AKSI+HA
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKRELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKAGFIEDPNVPLDRILSLDVRAILERRLQTIVYRMGLAKSIYHA 124          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18
Identity = 53/116 (45.69%), Postives = 71/116 (61.21%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  P+ KERLD E  LV +Y L+ K+ELW+ +  L   R  AR LL    K      E   LL+R+ R G L E  + LD VL+LT+++ LERRLQTLVFK G+A++I  A
Sbjct:    9 KRYETPSHPWIKERLDRERVLVQKYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQA 121          
The following BLAST results are available for this feature:
BLAST of CK739562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS4_METJA9.908e-1940.8330S ribosomal protein S4P OS=Methanocaldococcus ja... [more]
RS4_ARCFU1.294e-1839.5230S ribosomal protein S4P OS=Archaeoglobus fulgidu... [more]
RS4_THEVO2.207e-1844.3530S ribosomal protein S4P OS=Thermoplasma volcaniu... [more]
RS4_THEGJ2.207e-1846.5530S ribosomal protein S4P OS=Thermococcus gammatol... [more]
RS4_AERPE2.207e-1840.5230S ribosomal protein S4P OS=Aeropyrum pernix GN=r... [more]
RS4_CALMQ2.883e-1847.8330S ribosomal protein S4P OS=Caldivirga maquilinge... [more]
RS4_METTP3.765e-1839.3230S ribosomal protein S4P OS=Methanosaeta thermoph... [more]
RS4_SULTO4.917e-1839.6630S ribosomal protein S4P OS=Sulfolobus tokodaii G... [more]
RS4_PYRAR4.917e-1843.8630S ribosomal protein S4P OS=Pyrobaculum arsenatic... [more]
RS4_THESM6.422e-1845.6930S ribosomal protein S4P OS=Thermococcus sibiricu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5949 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739562 ID=CK739562; Name=CK739562; organism=Citrus sinensis; type=EST; length=377bp
TGCACGTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGA
CGTCCCTATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGA
GTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGA
GCCGCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAAC
CCACGTCGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTA
CGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCA
CTGTGGAGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGT
GGCATGGCTAAGTCAATTCACCATGCT
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