CK739562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18 Identity = 49/114 (42.98%), Postives = 74/114 (64.91%), Query Frame = 3 Query: 42 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL--DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 KP++ + K+ L EL+LVGEYGLR K+ELW + L I AR LL++ +E+ P + ++++ GF+E+ LD +L+L V LERRLQT+V++ G+AKSI+HA Sbjct: 15 KPKKIWNKQLLLEELQLVGEYGLRNKKELWLARAHLKWIVRRARSLLSMTPEERAPLEL----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHA 124
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_THENV (30S ribosomal protein S4P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.095e-17 Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = 3 Query: 42 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ LD VL+L V LERRLQT+V++ G+AKSI+HA Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARAHLKWIVRRARSLLSMTAEERAPLEL----PFKEKLYKMGFIEDPNVPLDRVLSLDVRAILERRLQTIVYRMGLAKSIYHA 124
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_PICTO (30S ribosomal protein S4P OS=Picrophilus torridus GN=rps4p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.095e-17 Identity = 50/117 (42.74%), Postives = 74/117 (63.25%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL-LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K + PR P+EK+R+DAE +L+ +YGL+ KRELWR Q L+ R AR L L +P I + + L+ ++ R L E+ LD VL+L +E+ LERRL+TLV+K +A ++ A Sbjct: 9 KKYSTPRHPWEKDRIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTLQAKLRYNDPLAIKQFQLLIGKLSRLNLLGENAT-LDDVLSLNIEDILERRLETLVYKKNLALTMKQA 124
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METPE (30S ribosomal protein S4P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps4p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.431e-17 Identity = 50/115 (43.48%), Postives = 73/115 (63.48%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL---DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 365 K ++ P+RP+EK+R++ E R+V EYGLR KRE+WR Q L R R AAR+LL + + E LL ++R G L + D VL+L ++ LERRLQT+V++ G+A+S Sbjct: 9 KGYEAPKRPFEKQRIEDETRIVIEYGLRNKREVWRAQSVLRRYRKAARELLAFMSQSSDEQQIATKKEHLLGHLNRIGLLGPDADIGD-VLSLKIQQPLERRLQTMVYRQGLARS 122
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.187e-17 Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K ++ P P+ KERLD E L+ +Y L+ K+ELWR + L R AR LL K E LL+R++R G L + LD VL+LTVE+ L+RRLQT+VFK G+A++I A Sbjct: 9 KKYETPSHPWIKERLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERAQLLQRLNRLGLL-PADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQA 121
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.187e-17 Identity = 52/116 (44.83%), Postives = 70/116 (60.34%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R G L E LD VL+LTVE+ LERRLQT+V+K G+A+++ A Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLSRLKRLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQA 121
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.163e-17 Identity = 51/116 (43.97%), Postives = 70/116 (60.34%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R G L E LD VL+LT+E+ LERRLQT+V+K G+A+++ A Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQA 121
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.163e-17 Identity = 51/116 (43.97%), Postives = 70/116 (60.34%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R G L E LD VL+LT+E+ LERRLQT+V+K G+A+++ A Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQA 121
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 5.437e-17 Identity = 46/120 (38.33%), Postives = 73/120 (60.83%), Query Frame = 3 Query: 18 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 R + K +++P +P+++ L+ RL G YGLR KRELWR+ + + R AR LL + ++ E +++++ G L + LD +L L+VE FLERRLQT+V++ G AKS + A Sbjct: 5 RKHRKKYERPYKPWDRRVLEETNRLAGYYGLRNKRELWRMSFLAKKYRRIARQLLAAPKSESWKV---EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMA 120
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 9.274e-17 Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K+F+ PR P+++ R+ +E++LV YGLR KRE+W+ L R+ AR LL + R EG E +L ++ RYG + +S +D +L+L EN LERRLQT V + G+A+++ A Sbjct: 9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGII-KSDADIDDILSLKTENILERRLQTQVLRLGLARTVVQA 129 The following BLAST results are available for this feature:
BLAST of CK739562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739562 ID=CK739562; Name=CK739562; organism=Citrus sinensis; type=EST; length=377bpback to top |