CK739562

Overview
NameCK739562
Unique NameCK739562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18
Identity = 49/114 (42.98%), Postives = 74/114 (64.91%), Query Frame = 3
Query:   42 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL--DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            KP++ + K+ L  EL+LVGEYGLR K+ELW  +  L  I   AR LL++  +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQT+V++ G+AKSI+HA
Sbjct:   15 KPKKIWNKQLLLEELQLVGEYGLRNKKELWLARAHLKWIVRRARSLLSMTPEERAPLEL----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHA 124          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_THENV (30S ribosomal protein S4P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.095e-17
Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = 3
Query:   42 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            KP++ + K+ L  EL+L+GEYGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+    LD VL+L V   LERRLQT+V++ G+AKSI+HA
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARAHLKWIVRRARSLLSMTAEERAPLEL----PFKEKLYKMGFIEDPNVPLDRVLSLDVRAILERRLQTIVYRMGLAKSIYHA 124          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_PICTO (30S ribosomal protein S4P OS=Picrophilus torridus GN=rps4p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.095e-17
Identity = 50/117 (42.74%), Postives = 74/117 (63.25%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL-LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K +  PR P+EK+R+DAE +L+ +YGL+ KRELWR Q  L+  R  AR L   L   +P  I + + L+ ++ R   L E+   LD VL+L +E+ LERRL+TLV+K  +A ++  A
Sbjct:    9 KKYSTPRHPWEKDRIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTLQAKLRYNDPLAIKQFQLLIGKLSRLNLLGENAT-LDDVLSLNIEDILERRLETLVYKKNLALTMKQA 124          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METPE (30S ribosomal protein S4P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps4p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.431e-17
Identity = 50/115 (43.48%), Postives = 73/115 (63.48%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL---DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 365
            K ++ P+RP+EK+R++ E R+V EYGLR KRE+WR Q  L R R AAR+LL          +   + E LL  ++R G L    +  D VL+L ++  LERRLQT+V++ G+A+S
Sbjct:    9 KGYEAPKRPFEKQRIEDETRIVIEYGLRNKREVWRAQSVLRRYRKAARELLAFMSQSSDEQQIATKKEHLLGHLNRIGLLGPDADIGD-VLSLKIQQPLERRLQTMVYRQGLARS 122          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.187e-17
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELWR +  L   R  AR LL    K      E   LL+R++R G L  +   LD VL+LTVE+ L+RRLQT+VFK G+A++I  A
Sbjct:    9 KKYETPSHPWIKERLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERAQLLQRLNRLGLL-PADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQA 121          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.187e-17
Identity = 52/116 (44.83%), Postives = 70/116 (60.34%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LTVE+ LERRLQT+V+K G+A+++  A
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLSRLKRLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQA 121          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.163e-17
Identity = 51/116 (43.97%), Postives = 70/116 (60.34%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  A
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQA 121          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.163e-17
Identity = 51/116 (43.97%), Postives = 70/116 (60.34%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  A
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQA 121          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.437e-17
Identity = 46/120 (38.33%), Postives = 73/120 (60.83%), Query Frame = 3
Query:   18 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            R + K +++P +P+++  L+   RL G YGLR KRELWR+ +   + R  AR LL   +    ++   E +++++   G L +    LD +L L+VE FLERRLQT+V++ G AKS + A
Sbjct:    5 RKHRKKYERPYKPWDRRVLEETNRLAGYYGLRNKRELWRMSFLAKKYRRIARQLLAAPKSESWKV---EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMA 120          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.274e-17
Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K+F+ PR P+++ R+ +E++LV  YGLR KRE+W+    L   R+ AR LL     +  R  EG      E +L ++ RYG + +S   +D +L+L  EN LERRLQT V + G+A+++  A
Sbjct:    9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGII-KSDADIDDILSLKTENILERRLQTQVLRLGLARTVVQA 129          
The following BLAST results are available for this feature:
BLAST of CK739562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS4_PYRIL6.422e-1842.9830S ribosomal protein S4P OS=Pyrobaculum islandicu... [more]
RS4_THENV1.095e-1743.8630S ribosomal protein S4P OS=Thermoproteus neutrop... [more]
RS4_PICTO1.095e-1742.7430S ribosomal protein S4P OS=Picrophilus torridus ... [more]
RS4_METPE1.431e-1743.4830S ribosomal protein S4P OS=Methanosphaerula palu... [more]
RS4_THEON3.187e-1744.8330S ribosomal protein S4P OS=Thermococcus onnurine... [more]
RS4_PYRHO3.187e-1744.8330S ribosomal protein S4P OS=Pyrococcus horikoshii... [more]
RS4_PYRFU4.163e-1743.9730S ribosomal protein S4P OS=Pyrococcus furiosus G... [more]
RS4_PYRAB4.163e-1743.9730S ribosomal protein S4P OS=Pyrococcus abyssi GN=... [more]
RS4_KORCO5.437e-1738.3330S ribosomal protein S4P OS=Korarchaeum cryptofil... [more]
RS4_METBF9.274e-1739.3430S ribosomal protein S4P OS=Methanosarcina barker... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5949 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739562 ID=CK739562; Name=CK739562; organism=Citrus sinensis; type=EST; length=377bp
TGCACGTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGA
CGTCCCTATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGA
GTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGA
GCCGCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAAC
CCACGTCGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTA
CGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCA
CTGTGGAGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGT
GGCATGGCTAAGTCAATTCACCATGCT
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