CK739562

Overview
NameCK739562
Unique NameCK739562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_HALMA (30S ribosomal protein S4P OS=Haloarcula marismortui GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.274e-17
Identity = 50/116 (43.10%), Postives = 68/116 (58.62%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  P++ ER+  E  L+G YGL+ K ELWR Q  L   R  AR LL    ++     E E  L R+ RYG L E Q++LD VL+L V + LERRLQT+V++ G A +   A
Sbjct:    8 KFYETPNHPFQGERIADEANLIGRYGLKNKEELWRAQSELRGYRREARKLLGSAGEHET---ESEEFLARLKRYGILNE-QDQLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQA 119          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METHJ (30S ribosomal protein S4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.211e-16
Identity = 49/115 (42.61%), Postives = 73/115 (63.48%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD---EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 365
            K ++ P+RP+E  R++ E RLV EYGLR KRE+W  + AL + R AAR+++ L     +  R   + + L+  + R G L E+ + +D VLAL VE  L+RRLQT V++ G A+S
Sbjct:    9 KQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENAD-IDDVLALKVEQQLDRRLQTQVYRRGFARS 122          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.066e-16
Identity = 44/116 (37.93%), Postives = 72/116 (62.07%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L++    +D +L+LT ++ LERRLQT+V+K G++ +I+ A
Sbjct:    9 KKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AERAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQA 122          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_PYRKO (30S ribosomal protein S4P OS=Pyrococcus kodakaraensis GN=rps4p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.066e-16
Identity = 50/116 (43.10%), Postives = 70/116 (60.34%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  P+ KERLD E  L   Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R++R G L  +   LD VL+LTVE+ LERRLQT+V++ G+A+++  A
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRNYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLYRLGLL-PADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQA 121          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METLZ (30S ribosomal protein S4P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps4p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.066e-16
Identity = 45/115 (39.13%), Postives = 71/115 (61.74%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 365
            K +  P+R +EK R+++E  L   YGLR KRE+WR    L + R+ AR++L +     + P+ I   + L+  + RYG L      +D +L+L VE+ LERRLQT+V++ G+A+S
Sbjct:    9 KQYSSPKRRFEKSRIESERVLAITYGLRNKREIWRATEVLRKHRSGAREVLAMTSSIGEAPKTIARRDELVGTLQRYGLLGPDA-AMDNILSLKVEDILERRLQTIVYRKGLARS 122          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METMJ (30S ribosomal protein S4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.698e-16
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 365
            K +  P+R +EK RL+ E RL+ +YGLR KRELW+ Q  L + R  AR+L+ L          + + + L+  ++RYG + E+ +  D VLAL VE  L+RRLQTLV + G A+S
Sbjct:    9 KQYATPKRRFEKTRLEDEKRLIIDYGLRNKRELWKAQSVLRKYRAGARELVALRSGGLSTEDYLKKRDQLVNHLYRYGLVGENADVGD-VLALKVEQQLDRRLQTLVLRRGFARS 122          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_SULIY (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + A
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQA 122          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_SULIN (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + A
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQA 122          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_SULIM (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + A
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQA 122          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_SULIL (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + A
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQA 122          
The following BLAST results are available for this feature:
BLAST of CK739562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS4_HALMA9.274e-1743.1030S ribosomal protein S4P OS=Haloarcula marismortu... [more]
RS4_METHJ1.211e-1642.6130S ribosomal protein S4P OS=Methanospirillum hung... [more]
RS4_SULSO2.066e-1637.9330S ribosomal protein S4P OS=Sulfolobus solfataric... [more]
RS4_PYRKO2.066e-1643.1030S ribosomal protein S4P OS=Pyrococcus kodakaraen... [more]
RS4_METLZ2.066e-1639.1330S ribosomal protein S4P OS=Methanocorpusculum la... [more]
RS4_METMJ2.698e-1642.6130S ribosomal protein S4P OS=Methanoculleus marisn... [more]
RS4_SULIY3.524e-1637.9330S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIN3.524e-1637.9330S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIM3.524e-1637.9330S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIL3.524e-1637.9330S ribosomal protein S4P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5949 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739562 ID=CK739562; Name=CK739562; organism=Citrus sinensis; type=EST; length=377bp
TGCACGTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGA
CGTCCCTATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGA
GTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGA
GCCGCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAAC
CCACGTCGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTA
CGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCA
CTGTGGAGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGT
GGCATGGCTAAGTCAATTCACCATGCT
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