CK739562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_SULIK (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4p PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16 Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + G L+ +D +L+LT ++ LERRLQT+V+K G+A + + A Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQA 122
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_SULIA (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.27) GN=rps4p PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16 Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + G L+ +D +L+LT ++ LERRLQT+V+K G+A + + A Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQA 122
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METM5 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4p PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16 Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 3 Query: 18 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 R GK + P P+ ER+ +E + +YGL K+ELW+++ L R AR L++ + + E L + RY L ES+ LD+VL+L +E+ LERRLQT+V++ G+AK+ A Sbjct: 5 RRLGKKYDTPNHPWIGERIQSEKEISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVESEPTLDHVLSLNIESILERRLQTIVYRKGLAKTAKQA 122
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METM7 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4p PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.603e-16 Identity = 45/120 (37.50%), Postives = 69/120 (57.50%), Query Frame = 3 Query: 18 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 R GK + P P+ ER+ +E + +YGL K+ELW+++ L R AR L++ + + E L + RY L E + LD+VL+L +E+ LERRLQT+V+K G+AK+ A Sbjct: 5 RRLGKKYDTPNHPWIGERIQSEREISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLNIESILERRLQTMVYKKGLAKTAKQA 122
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METTH (30S ribosomal protein S4P OS=Methanobacterium thermoautotrophicum GN=rps4p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 7.851e-16 Identity = 50/120 (41.67%), Postives = 71/120 (59.17%), Query Frame = 3 Query: 18 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 R K + P P+ ER+ E RLV +YGL+ K+E+W+ + + R R AR LL + ++ + E E LL + R G L E KL+ VL LTVE+ L RRLQTLV K G+A+++ A Sbjct: 5 RKARKKYDTPPHPWNAERIKEENRLVAKYGLKNKKEVWKAETMVRRYRRDARYLLGMASEHTGK--EREQLLGHLVRTGILNEGA-KLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKEA 121
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METVS (30S ribosomal protein S4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.339e-15 Identity = 44/120 (36.67%), Postives = 68/120 (56.67%), Query Frame = 3 Query: 18 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 R GK + P P+ ER+ E + +YGL K+ELW+++ L R AR L++ + + E L + RY L E + LD++L+L +E+ LERRLQTLV++ G+AK+ A Sbjct: 5 RRLGKKYDTPNHPWIGERIQKEREISHKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHILSLNIESILERRLQTLVYRKGLAKTAKQA 122
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METMP (30S ribosomal protein S4P OS=Methanococcus maripaludis GN=rps4p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15 Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 3 Query: 18 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 365 R GK + P P+ ER+ E + +YGL K+ELW+++ L R AR L++ + + E L + RY L E + LD+VL+L +E+ LERRLQT+VF+ G+AK+ Sbjct: 5 RRLGKKYDTPNHPWIGERIQKEKEISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILIEEEPTLDHVLSLNIESILERRLQTIVFRKGLAKT 118
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METM6 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4p PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.284e-15 Identity = 44/120 (36.67%), Postives = 68/120 (56.67%), Query Frame = 3 Query: 18 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 R GK + P P+ ER+ E + +YGL K+ELW+++ L R AR L++ + + E L + RY L E + LD+VL+L +E+ LERRLQT+V++ G+AK+ A Sbjct: 5 RRLGKKYDTPNHPWIGERIQKEREISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLDIESILERRLQTIVYRKGLAKTAKQA 122
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METS5 (30S ribosomal protein S4P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15 Identity = 41/120 (34.17%), Postives = 73/120 (60.83%), Query Frame = 3 Query: 18 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 R + ++ P P+ + L +E +++G+YGLR K+E+W + ++ R+ AR LL L R + LL ++++ G L+ Q+ +D +L L E+ LERRLQT+V + G+A++I+ A Sbjct: 5 RKSRRKWEGPGMPWLSQALKSEQKIMGDYGLRNKKEIWLARTIVTGYRHMARSLLALPPAE--RAVREKQLLGKLYKLGLLKSEQSTIDDILGLEEESLLERRLQTIVHRKGLARTIYQA 122
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METMA (30S ribosomal protein S4P OS=Methanosarcina mazei GN=rps4p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15 Identity = 45/123 (36.59%), Postives = 72/123 (58.54%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL-------DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K+++ PR P+++ R+ AE++LV YGLR K+E+W+ L R+ AR LL E + E +L ++ RYG ++ N +D +L+L EN LERRLQT V + G+A+++ A Sbjct: 9 KSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQEGELEGHYATQSEEILSKLIRYGIIKADAN-VDDILSLKTENILERRLQTQVLRLGLARTVIQA 130 The following BLAST results are available for this feature:
BLAST of CK739562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739562 ID=CK739562; Name=CK739562; organism=Citrus sinensis; type=EST; length=377bpback to top |