CK739562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_HALSA (30S ribosomal protein S4P OS=Halobacterium salinarium GN=rps4p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15 Identity = 47/116 (40.52%), Postives = 65/116 (56.03%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K ++ P PY+ ER+ E L+ YGL+ K ELWR Q L R AR LL GE + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++ A Sbjct: 9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSE-EERLDDVLSLEVTDVLERRLQTVVYREGLANTMGQA 118
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_HALS3 (30S ribosomal protein S4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15 Identity = 47/116 (40.52%), Postives = 65/116 (56.03%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K ++ P PY+ ER+ E L+ YGL+ K ELWR Q L R AR LL GE + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++ A Sbjct: 9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSE-EERLDDVLSLEVTDVLERRLQTVVYREGLANTMGQA 118
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METAC (30S ribosomal protein S4P OS=Methanosarcina acetivorans GN=rps4p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.646e-15 Identity = 44/122 (36.07%), Postives = 71/122 (58.20%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K+++ P+ P+++ R+ E++LV YGLR K+E+W+ L R+ AR LL EG E +L ++ RYG ++ N +D +L+L EN LERRLQT V + G+A+++ A Sbjct: 9 KSYETPKHPWQEARMATEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEGGLEGHYRTQSEEILSKLIRYGIIKSDAN-IDDILSLKTENILERRLQTQVLRLGLARTVIQA 129
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_META3 (30S ribosomal protein S4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.646e-15 Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = 3 Query: 18 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 365 R KT+ P P+ ER+ E L +YGL K+E+W+++ L R AR L++ + E L ++RYG L + LD VL+L +E+ LERRLQTLVF+ G+A + Sbjct: 5 RRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTSAQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANT 118
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_HALWD (30S ribosomal protein S4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps4p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.680e-15 Identity = 46/114 (40.35%), Postives = 66/114 (57.89%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE--GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 365 K ++ P PY+ ER+ E L+G YGL+ K ELWR Q L R AR L+ + + + E GE L R+ RYG L + + + VL L V + LERRLQT+V++ G+A + Sbjct: 8 KRYETPNHPYQGERIAQEGDLLGRYGLKNKEELWRTQSELREYRREARRLIG-EAQGDVSVAEALGEEFLDRLRRYGIL-SADDDISKVLGLDVSDILERRLQTIVYRQGLAST 119
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_CENSY (30S ribosomal protein S4P OS=Cenarchaeum symbiosum GN=rps4p PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14 Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFK 347 + ++KP+RP+ + ELR +G +GLR KRELW+ LSR+RN AR LL L ++ R + LLR + R G + + + LD VL L V + L RRLQT+V K Sbjct: 9 RMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQEVRER--KEPVLLRSLARIGLVGKDAS-LDDVLNLQVNDLLGRRLQTIVMK 111
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METBU (30S ribosomal protein S4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps4p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14 Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNP---RRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K++ P+ P++ ER+ +E+ LV +YGLR KRELW+ L R R AR LL ++ E + LL ++ R+ L+ N +D VL L E LERRLQT V + G+A++ A Sbjct: 9 KSYDTPQHPWQAERMASEVELVKKYGLRNKRELWKSLSVLRRFRGDARRLLAESAESDLIGHSKTEADQLLTKLIRFSILKSDSN-IDDVLGLQTEAILERRLQTQVHRLGLARTARQA 126
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_UNCMA (30S ribosomal protein S4P OS=Uncultured methanogenic archaeon RC-I GN=rps4p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.298e-14 Identity = 43/121 (35.54%), Postives = 72/121 (59.50%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE-----KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 K + P P++K R+D E LV +YGLR K+ +W+ L + R+ AR LL + ++ I + + +++++ G L+E KL+ VLAL V++ +ERRLQT++++ G A SI A Sbjct: 9 KLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDAQNIVKKLQTLGILKEDA-KLEDVLALKVDDIMERRLQTIIYRKGFANSIKQA 128
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_NANEQ (30S ribosomal protein S4P OS=Nanoarchaeum equitans GN=rps4p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377 + ++ P P++K+RL E RL+ EYGL+ KRELW + + R AR L E E L ++ + G L E+ +LD VL LTV++ LERRLQT++ + G+AK++ A Sbjct: 6 RKWEGPSHPWQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQA 120
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_NITMS (30S ribosomal protein S4P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps4p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.792e-13 Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 3 Query: 30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFK 347 + ++KP+RP E EL+ +G +GLR KRELW+ LSR+R+ AR LL L + R + L++ + R G L S LD VL LT + L RRLQT+V K Sbjct: 9 RVWRKPKRPLNYELKMEELKTLGTFGLRTKRELWKAHTELSRVRHQARSLLAL--RQEVRAEKEPILMKSLARIG-LVSSDATLDDVLNLTANDLLSRRLQTIVTK 111 The following BLAST results are available for this feature:
BLAST of CK739562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739562 ID=CK739562; Name=CK739562; organism=Citrus sinensis; type=EST; length=377bpback to top |