CK739562

Overview
NameCK739562
Unique NameCK739562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_HALSA (30S ribosomal protein S4P OS=Halobacterium salinarium GN=rps4p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 47/116 (40.52%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  PY+ ER+  E  L+  YGL+ K ELWR Q  L   R  AR LL            GE  + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++  A
Sbjct:    9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSE-EERLDDVLSLEVTDVLERRLQTVVYREGLANTMGQA 118          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_HALS3 (30S ribosomal protein S4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 47/116 (40.52%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K ++ P  PY+ ER+  E  L+  YGL+ K ELWR Q  L   R  AR LL            GE  + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++  A
Sbjct:    9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSE-EERLDDVLSLEVTDVLERRLQTVVYREGLANTMGQA 118          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METAC (30S ribosomal protein S4P OS=Methanosarcina acetivorans GN=rps4p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.646e-15
Identity = 44/122 (36.07%), Postives = 71/122 (58.20%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K+++ P+ P+++ R+  E++LV  YGLR K+E+W+    L   R+ AR LL           EG      E +L ++ RYG ++   N +D +L+L  EN LERRLQT V + G+A+++  A
Sbjct:    9 KSYETPKHPWQEARMATEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEGGLEGHYRTQSEEILSKLIRYGIIKSDAN-IDDILSLKTENILERRLQTQVLRLGLARTVIQA 129          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_META3 (30S ribosomal protein S4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.646e-15
Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   18 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 365
            R   KT+  P  P+  ER+  E  L  +YGL  K+E+W+++  L   R  AR L++       +  E   L   ++RYG L +    LD VL+L +E+ LERRLQTLVF+ G+A +
Sbjct:    5 RRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTSAQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANT 118          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_HALWD (30S ribosomal protein S4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps4p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.680e-15
Identity = 46/114 (40.35%), Postives = 66/114 (57.89%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE--GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 365
            K ++ P  PY+ ER+  E  L+G YGL+ K ELWR Q  L   R  AR L+  + +    + E  GE  L R+ RYG L  + + +  VL L V + LERRLQT+V++ G+A +
Sbjct:    8 KRYETPNHPYQGERIAQEGDLLGRYGLKNKEELWRTQSELREYRREARRLIG-EAQGDVSVAEALGEEFLDRLRRYGIL-SADDDISKVLGLDVSDILERRLQTIVYRQGLAST 119          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_CENSY (30S ribosomal protein S4P OS=Cenarchaeum symbiosum GN=rps4p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFK 347
            + ++KP+RP+  +    ELR +G +GLR KRELW+    LSR+RN AR LL L ++   R  +   LLR + R G + +  + LD VL L V + L RRLQT+V K
Sbjct:    9 RMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQEVRER--KEPVLLRSLARIGLVGKDAS-LDDVLNLQVNDLLGRRLQTIVMK 111          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_METBU (30S ribosomal protein S4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps4p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNP---RRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K++  P+ P++ ER+ +E+ LV +YGLR KRELW+    L R R  AR LL    ++        E + LL ++ R+  L+   N +D VL L  E  LERRLQT V + G+A++   A
Sbjct:    9 KSYDTPQHPWQAERMASEVELVKKYGLRNKRELWKSLSVLRRFRGDARRLLAESAESDLIGHSKTEADQLLTKLIRFSILKSDSN-IDDVLGLQTEAILERRLQTQVHRLGLARTARQA 126          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_UNCMA (30S ribosomal protein S4P OS=Uncultured methanogenic archaeon RC-I GN=rps4p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.298e-14
Identity = 43/121 (35.54%), Postives = 72/121 (59.50%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE-----KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            K +  P  P++K R+D E  LV +YGLR K+ +W+    L + R+ AR LL +       ++   I + + +++++   G L+E   KL+ VLAL V++ +ERRLQT++++ G A SI  A
Sbjct:    9 KLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDAQNIVKKLQTLGILKEDA-KLEDVLALKVDDIMERRLQTIIYRKGFANSIKQA 128          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_NANEQ (30S ribosomal protein S4P OS=Nanoarchaeum equitans GN=rps4p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13
Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 377
            + ++ P  P++K+RL  E RL+ EYGL+ KRELW  +    + R  AR L            E E  L ++ + G L E+  +LD VL LTV++ LERRLQT++ + G+AK++  A
Sbjct:    6 RKWEGPSHPWQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQA 120          
BLAST of CK739562 vs. ExPASy Swiss-Prot
Match: RS4_NITMS (30S ribosomal protein S4P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.792e-13
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 3
Query:   30 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFK 347
            + ++KP+RP   E    EL+ +G +GLR KRELW+    LSR+R+ AR LL L  +   R  +   L++ + R G L  S   LD VL LT  + L RRLQT+V K
Sbjct:    9 RVWRKPKRPLNYELKMEELKTLGTFGLRTKRELWKAHTELSRVRHQARSLLAL--RQEVRAEKEPILMKSLARIG-LVSSDATLDDVLNLTANDLLSRRLQTIVTK 111          
The following BLAST results are available for this feature:
BLAST of CK739562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS4_HALSA3.896e-1540.5230S ribosomal protein S4P OS=Halobacterium salinar... [more]
RS4_HALS33.896e-1540.5230S ribosomal protein S4P OS=Halobacterium salinar... [more]
RS4_METAC6.646e-1536.0730S ribosomal protein S4P OS=Methanosarcina acetiv... [more]
RS4_META36.646e-1537.9330S ribosomal protein S4P OS=Methanococcus aeolicu... [more]
RS4_HALWD8.680e-1540.3530S ribosomal protein S4P OS=Haloquadratum walsbyi... [more]
RS4_CENSY1.134e-1443.4030S ribosomal protein S4P OS=Cenarchaeum symbiosum... [more]
RS4_METBU2.526e-1438.6630S ribosomal protein S4P OS=Methanococcoides burt... [more]
RS4_UNCMA3.298e-1435.5430S ribosomal protein S4P OS=Uncultured methanogen... [more]
RS4_NANEQ2.138e-1338.7930S ribosomal protein S4P OS=Nanoarchaeum equitans... [more]
RS4_NITMS2.792e-1342.4530S ribosomal protein S4P OS=Nitrosopumilus mariti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5949 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739562 ID=CK739562; Name=CK739562; organism=Citrus sinensis; type=EST; length=377bp
TGCACGTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGA
CGTCCCTATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGA
GTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGA
GCCGCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAAC
CCACGTCGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTA
CGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCA
CTGTGGAGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGT
GGCATGGCTAAGTCAATTCACCATGCT
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