CK739565

Overview
NameCK739565
Unique NameCK739565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_GINBI (Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.311e-20
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 2
Query:  245 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            +EVL+GG  G LAF+P+   V++GE+IVFKNNAGFPHNV+FDED +P
Sbjct:    1 VEVLMGGSGGELAFIPNELQVNAGEQIVFKNNAGFPHNVIFDEDAVP 47          

HSP 2 Score: 41.5874 bits (96), Expect = 8.311e-20
Identity = 19/23 (82.61%), Postives = 20/23 (86.96%), Query Frame = 3
Query:  384 PSGVDVSKISMSTEDLLNGPGET 452
            P+GVDVS ISMS EDLLN PGET
Sbjct:   47 PAGVDVSSISMSEEDLLNAPGET 69          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_FRIAG (Plastocyanin, chloroplastic OS=Fritillaria agrestis GN=PETE PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.179e-19
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 2
Query:   77 FTGLKAGATPARVVGSTMKASASAVPKLSIKATLKD-VGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPE 388
            FTGLKAG  P     S    +  +    S+KA+ K+ +G                  +EVLLGG DGSLAFVPS+  V++GE +VFKNNAGFPHNV+FDEDE+P+
Sbjct:   14 FTGLKAGRAPTTPSTSIKPPTPMS---FSVKASFKEAIGTALVATAAGAVLASNALAVEVLLGGSDGSLAFVPSNIEVAAGETVVFKNNAGFPHNVLFDEDEVPK 115          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_CUCPE (Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.395e-18
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 2
Query:  245 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            IEVLLGGDDGSLAF+P+ FSV++GEKIVFKNNAGFPHNVVFDEDEIP
Sbjct:    1 IEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIP 47          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_CUCSA (Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.108e-18
Identity = 41/47 (87.23%), Postives = 46/47 (97.87%), Query Frame = 2
Query:  245 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            IE+LLGGDDGSLAFVP++F+V+SGEKI FKNNAGFPHNVVFDEDEIP
Sbjct:    1 IEILLGGDDGSLAFVPNNFTVASGEKITFKNNAGFPHNVVFDEDEIP 47          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_SOLTU (Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.924e-18
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 2
Query:  245 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            ++VLLGGDDGSLAF+P +FSVS+GEKI FKNNAGFPHNVVFDEDEIP
Sbjct:    1 LDVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIP 47          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_CAPBU (Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.181e-17
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 2
Query:  245 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            IEVLLGG DGSLAFVP+ FS++ GEKIVFKNNAGFPHNVVFDEDEIP
Sbjct:    1 IEVLLGGGDGSLAFVPNDFSIAKGEKIVFKNNAGFPHNVVFDEDEIP 47          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS2_TOBAC (Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.015e-17
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 2
Query:  245 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            IEVLLG DDG LAFVP +FSVS+GEKI FKNNAGFPHNVVFDEDEIP
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIP 47          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS1_TOBAC (Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.015e-17
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 2
Query:  245 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            IEVLLG DDG LAFVP +FSVS+GEKI FKNNAGFPHNVVFDEDEIP
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIP 47          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_SOLCR (Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.631e-17
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 2
Query:  245 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            IEVLLG DDG LAFVP +FS+S+GEKI FKNNAGFPHNVVFDEDEIP
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSISAGEKITFKNNAGFPHNVVFDEDEIP 47          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_PHAVU (Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.861e-17
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 2
Query:  245 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            +EVLLG  DGSL FVPS FSV SGEKIVFKNNAGFPHNVVFDEDEIP
Sbjct:    1 LEVLLGSGDGSLVFVPSEFSVPSGEKIVFKNNAGFPHNVVFDEDEIP 47          
The following BLAST results are available for this feature:
BLAST of CK739565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PLAS_GINBI8.311e-2065.96Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1[more]
PLAS_FRIAG8.179e-1947.62Plastocyanin, chloroplastic OS=Fritillaria agresti... [more]
PLAS_CUCPE1.395e-1889.36Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1[more]
PLAS_CUCSA3.108e-1887.23Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1[more]
PLAS_SOLTU6.924e-1885.11Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=... [more]
PLAS_CAPBU1.181e-1787.23Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE... [more]
PLAS2_TOBAC2.015e-1787.23Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS1_TOBAC2.015e-1787.23Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS_SOLCR2.631e-1785.11Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1[more]
PLAS_PHAVU5.861e-1787.23Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5952 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739565 ID=CK739565; Name=CK739565; organism=Citrus sinensis; type=EST; length=477bp
AAAAGAAAAAACAGCAGAACCCCATTTACAGTTACAATGGCTACTGTCAC
CTCTGCAGCTGTCACCGTCCCAACTTTTCACCGGCCTTAAAGCCGGTGCA
ACACCAGCCAGAGTTGTTGGTTCCACCATGAAGGCCTCAGCCTCTGCTGT
CCCAAAGCTCAGCATCAAGGCCACACTCAAAGATGTTGGAGTGGCCGTTG
CGGCCACAGCTGCCAGCGCAATGCTTGCTAGCAATGCCATGGCCATTGAG
GTTTTGCTTGGTGGTGATGATGGGTCCTTGGCTTTTGTTCCAAGCTCTTT
CTCTGTCAGCTCCGGTGAAAAGATTGTGTTCAAGAACAATGCTGGGTTCC
CACACAACGTTGTTTTCGATGAAGATGAGATTCCCGAGTGGTGTTGATGT
TTCAAAAATCTCCATGTCTACAGAAGACCTTCTCAATGGTCCTGGAGAGA
CTTTATGCTGTTACTCTGACTGAAAAG
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