CK739565

Overview
NameCK739565
Unique NameCK739565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_MERPE (Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.998e-17
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 2
Query:  245 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            ++VLLG DDG LAFVP++FSV SGEKI FKNNAGFPHNVVFDEDEIP
Sbjct:    1 LDVLLGSDDGELAFVPNNFSVPSGEKITFKNNAGFPHNVVFDEDEIP 47          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_DAUCA (Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.005e-16
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 2
Query:  248 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            EV LG DDG+L F PSSFSV+ GE I FKNNAGFPHN+VFDEDE+P
Sbjct:    2 EVKLGADDGALVFSPSSFSVAKGEGISFKNNAGFPHNIVFDEDEVP 47          

HSP 2 Score: 29.261 bits (64), Expect = 1.005e-16
Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = 3
Query:  384 PSGVDVSKISMSTEDLLNGPGET 452
            P+GVDVSKIS   ED L+G GE+
Sbjct:   47 PAGVDVSKISQ--EDYLDGAGES 67          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_VICFA (Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.962e-16
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 2
Query:  245 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            +EVLLG  DG LAFVP+SF VS+G+ IVFKNNAGFPHNVVFDEDEIP
Sbjct:    1 VEVLLGASDGGLAFVPNSFEVSAGDTIVFKNNAGFPHNVVFDEDEIP 47          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_LACSA (Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.962e-16
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 2
Query:  248 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            EVLLG  DG L F PS+FSV+SGEKIVFKNNAGFPHNVVFDEDEIP
Sbjct:    2 EVLLGSSDGGLVFEPSTFSVASGEKIVFKNNAGFPHNVVFDEDEIP 47          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSJ (Plastocyanin, chloroplastic OS=Oryza sativa subsp. japonica GN=PETE PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.845e-16
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 2
Query:  248 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            EVLLG + G L F P+ F+V SGE I FKNNAGFPHNVVFDED +P
Sbjct:   59 EVLLGANGGVLVFEPNDFTVKSGETITFKNNAGFPHNVVFDEDAVP 104          

HSP 2 Score: 33.113 bits (74), Expect = 7.845e-16
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 3
Query:  384 PSGVDVSKISMSTEDLLNGPGET 452
            PSGVDVSKIS   E+ LN PGET
Sbjct:  104 PSGVDVSKISQ--EEYLNAPGET 124          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSI (Plastocyanin, chloroplastic OS=Oryza sativa subsp. indica GN=PETE PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.845e-16
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 2
Query:  248 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            EVLLG + G L F P+ F+V SGE I FKNNAGFPHNVVFDED +P
Sbjct:   59 EVLLGANGGVLVFEPNDFTVKSGETITFKNNAGFPHNVVFDEDAVP 104          

HSP 2 Score: 33.113 bits (74), Expect = 7.845e-16
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 3
Query:  384 PSGVDVSKISMSTEDLLNGPGET 452
            PSGVDVSKIS   E+ LN PGET
Sbjct:  104 PSGVDVSKISQ--EEYLNAPGET 124          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_PETCR (Plastocyanin A/B OS=Petroselinum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 2
Query:  248 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            EV LG DDG L F PSSF+V++GEKI FKNNAGFPHN+VFDEDE+P
Sbjct:    2 EVKLGSDDGGLVFSPSSFTVAAGEKITFKNNAGFPHNIVFDEDEVP 47          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_HORVU (Plastocyanin, chloroplastic OS=Hordeum vulgare GN=PETE PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.821e-14
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 2
Query:  248 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            +VLLG + G L F P+ FSV +GE I FKNNAG+PHNVVFDED +P
Sbjct:   60 DVLLGANGGVLVFEPNDFSVKAGETITFKNNAGYPHNVVFDEDAVP 105          

HSP 2 Score: 30.8018 bits (68), Expect = 1.821e-14
Identity = 16/23 (69.57%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  384 PSGVDVSKISMSTEDLLNGPGET 452
            PSGVDVSKIS   E+ L  PGET
Sbjct:  105 PSGVDVSKISQ--EEYLTAPGET 125          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_PHYPA (Plastocyanin, chloroplastic OS=Physcomitrella patens GN=PETE PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.556e-14
Identity = 43/105 (40.95%), Postives = 55/105 (52.38%), Query Frame = 2
Query:   77 FTGLKAG--ATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            F+GLKA   A PAR+  +++   A  V   +    LK VG                    V +GGDDG+L F P   SV++GE + F NN GFPHNVVFDED +P
Sbjct:   14 FSGLKAETKAAPARLSSTSVVRMAPVVRASASSDALKTVGKALLAASSSLLLVASANAATVKMGGDDGALGFYPKDISVAAGESVTFVNNKGFPHNVVFDEDAVP 118          
BLAST of CK739565 vs. ExPASy Swiss-Prot
Match: PLAS_ULVPE (Plastocyanin OS=Ulva pertusa GN=PETE PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 2
Query:  251 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIP 385
            V LGGDDGSLAFVPS  SV++GE I F NNAGFPHN+VFDED +P
Sbjct:    4 VKLGGDDGSLAFVPSKISVAAGEAIEFVNNAGFPHNIVFDEDAVP 48          
The following BLAST results are available for this feature:
BLAST of CK739565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PLAS_MERPE9.998e-1782.98Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 ... [more]
PLAS_DAUCA1.005e-1676.09Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1[more]
PLAS_VICFA4.962e-1680.85Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1[more]
PLAS_LACSA4.962e-1684.78Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1[more]
PLAS_ORYSJ7.845e-1669.57Plastocyanin, chloroplastic OS=Oryza sativa subsp.... [more]
PLAS_ORYSI7.845e-1669.57Plastocyanin, chloroplastic OS=Oryza sativa subsp.... [more]
PLAS_PETCR5.486e-1576.09Plastocyanin A/B OS=Petroselinum crispum GN=PETE P... [more]
PLAS_HORVU1.821e-1465.22Plastocyanin, chloroplastic OS=Hordeum vulgare GN=... [more]
PLAS_PHYPA3.556e-1440.95Plastocyanin, chloroplastic OS=Physcomitrella pate... [more]
PLAS_ULVPE1.765e-1375.56Plastocyanin OS=Ulva pertusa GN=PETE PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5952 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739565 ID=CK739565; Name=CK739565; organism=Citrus sinensis; type=EST; length=477bp
AAAAGAAAAAACAGCAGAACCCCATTTACAGTTACAATGGCTACTGTCAC
CTCTGCAGCTGTCACCGTCCCAACTTTTCACCGGCCTTAAAGCCGGTGCA
ACACCAGCCAGAGTTGTTGGTTCCACCATGAAGGCCTCAGCCTCTGCTGT
CCCAAAGCTCAGCATCAAGGCCACACTCAAAGATGTTGGAGTGGCCGTTG
CGGCCACAGCTGCCAGCGCAATGCTTGCTAGCAATGCCATGGCCATTGAG
GTTTTGCTTGGTGGTGATGATGGGTCCTTGGCTTTTGTTCCAAGCTCTTT
CTCTGTCAGCTCCGGTGAAAAGATTGTGTTCAAGAACAATGCTGGGTTCC
CACACAACGTTGTTTTCGATGAAGATGAGATTCCCGAGTGGTGTTGATGT
TTCAAAAATCTCCATGTCTACAGAAGACCTTCTCAATGGTCCTGGAGAGA
CTTTATGCTGTTACTCTGACTGAAAAG
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