CK739586

Overview
NameCK739586
Unique NameCK739586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length393
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739586 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.105e-18
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 3
Query:    3 AAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKGSMDGAPYLRKVDLRTYTNYGETI 200
            A KA+VVGWPP+RSFRKN+LA                A F+K ++DGAPYLRKVDL  Y+ Y + +
Sbjct:   72 APKARVVGWPPVRSFRKNALA----------------AKFVKVAVDGAPYLRKVDLEAYSGYDQLL 121          

HSP 2 Score: 46.9802 bits (110), Expect = 1.105e-18
Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = 1
Query:  196 LSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDRMVTGCSLGDVPWEMFID 393
            L +  +K FS FTI +             E KL D ++G+EYV TYED+      +GDVPW+MF++
Sbjct:  121 LRALQDKFFSHFTIRKFAD---------DERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVE 177          
BLAST of CK739586 vs. ExPASy Swiss-Prot
Match: IAA31_ORYSJ (Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica GN=IAA31 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.175e-17
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 3
Query:    3 AAKAQVVGWPPIRSFRKNSL---ATTSKNN----------DEVDGKPGPGALFIKGSMDGAPYLRKVDLRTYTNYGE 194
            AAKAQVVGWPP+RS+RK+ L    TT+K+            + +   G G LF+K SMDGAPYLRK+DL+ Y  Y E
Sbjct:   49 AAKAQVVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSMDGAPYLRKIDLKVYKGYRE 125          

HSP 2 Score: 35.039 bits (79), Expect = 1.175e-17
Identity = 22/66 (33.33%), Postives = 32/66 (48.48%), Query Frame = 1
Query:  193 KLSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDRMVTGCSLGDVPWEMFI 390
            +L  ALE MF CF+ G                     ++ S++ +TYED+      +GDVP+EMFI
Sbjct:  125 ELREALEAMFLCFSGGAAADAA---------------VNPSDFAVTYEDKDGDLMLVGDVPFEMFI 175          
BLAST of CK739586 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.333e-17
Identity = 58/130 (44.62%), Postives = 79/130 (60.77%), Query Frame = 3
Query:    3 AAKAQVVGWPPIRSFRKNSLATTS-KNNDEVDGKPGPGALFIKGSMDGAPYLRKVDLRTYTNYGETIFCSGEDVQLLYN--WSMWIT--*STREGNAE*EQVEGSFA-WIRICAYI---*GQDGDWMLVG 365
            AAKAQVVGWPP+RS+RKN+LA ++ K   E  GK   G  ++K SMDGAPYLRKVDL+TY++Y        ED+ L     +S +IT   S+ + +      +GS A  ++   Y+     +D DWMLVG
Sbjct:  123 AAKAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSMDGAPYLRKVDLKTYSSY--------EDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVG 244          

HSP 2 Score: 67.3958 bits (163), Expect = 2.553e-11
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 1
Query:  196 LSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDRMVTGCSLGDVPWEMF 387
            LS ALEKMFSCF  G+  SH+   R+ L++    D L   EYVLTYED+      +GD+PW++F
Sbjct:  188 LSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDLPWDLF 251          
BLAST of CK739586 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.670e-16
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 1
Query:  193 KLSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDRMVTGCSLGDVPWEMFID 393
            +LS ALEKMFS FTIG CGSH   G   ++ESK+ DLL+GSEYV TYED+      +GDVPWEMF++
Sbjct:  186 ELSKALEKMFSSFTIGNCGSHGVNG---MNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVE 249          

HSP 2 Score: 77.0258 bits (188), Expect = 3.235e-14
Identity = 58/137 (42.34%), Postives = 73/137 (53.28%), Query Frame = 3
Query:    3 AAKAQVVGWPPIRSFRKNSLATTS-KNNDEVDG---KPGPGAL---FIKGSMDGAPYLRKVDLRTYTNYGETIFCSGEDVQLLYNWSMWIT*STREGNAE*EQVEGSFAWIRICAYI*G---------QDGDWMLVG 365
            A KAQVVGWPP+RS+RKN LA  + K  D  DG   K G GA    F+K SMDGAPYLRKVDL+ Y +Y E      + ++ +++       S   GN     V G     +I   + G         +DGDWMLVG
Sbjct:  116 APKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLEL----SKALEKMFS-------SFTIGNCGSHGVNG-MNESKIADLLNGSEYVPTYEDKDGDWMLVG 240          
BLAST of CK739586 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.313e-15
Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 3
Query:    3 AAKAQVVGWPPIRSFRKNSLATT-SKNNDEVDGKPGPGALFIKGSMDGAPYLRKVDLRTYTNYGETIFCSGEDVQLLYN--WSMWIT*ST--REGNAE*EQVEGSFA-WIRICAYI---*GQDGDWMLVG 365
            AAKAQVVGWPP+R++RKN+LA + SK   E  G    G L++K SMDGAPYLRKVDL+ Y++Y        ED+ +     +S +IT  +  R+ +       GS A  ++   Y+     +D DWMLVG
Sbjct:  113 AAKAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMYSSY--------EDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVG 234          

HSP 2 Score: 67.0106 bits (162), Expect = 3.335e-11
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1
Query:  196 LSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDRMVTGCSLGDVPWEMF 387
            LS ALEKMFSCF  GQ G  ++  R+ L+     D L   EYVLTYED+      +GD+PW++F
Sbjct:  178 LSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLF 241          
BLAST of CK739586 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.313e-15
Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 3
Query:    3 AAKAQVVGWPPIRSFRKNSLATT-SKNNDEVDGKPGPGALFIKGSMDGAPYLRKVDLRTYTNYGETIFCSGEDVQLLYN--WSMWIT*ST--REGNAE*EQVEGSFA-WIRICAYI---*GQDGDWMLVG 365
            AAKAQVVGWPP+R++RKN+LA + SK   E  G    G L++K SMDGAPYLRKVDL+ Y++Y        ED+ +     +S +IT  +  R+ +       GS A  ++   Y+     +D DWMLVG
Sbjct:  114 AAKAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMYSSY--------EDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVG 235          

HSP 2 Score: 67.0106 bits (162), Expect = 3.335e-11
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1
Query:  196 LSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDRMVTGCSLGDVPWEMF 387
            LS ALEKMFSCF  GQ G  ++  R+ L+     D L   EYVLTYED+      +GD+PW++F
Sbjct:  179 LSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLF 242          
BLAST of CK739586 vs. ExPASy Swiss-Prot
Match: IAA14_ORYSJ (Auxin-responsive protein IAA14 OS=Oryza sativa subsp. japonica GN=IAA14 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 5.177e-14
Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 3
Query:    3 AAKAQVVGWPPIRSFRKNSLATTS---------KNNDEVDG--KPGPGALFIKGSMDGAPYLRKVDLRTYTNYGE 194
            A+K QVVGWPP+ S+R+++  ++S         K   E D   K   G L++K SMDGAPYLRKVDLR Y  Y E
Sbjct:   60 ASKVQVVGWPPVGSYRRSTFQSSSSSTAAAAKGKGGGETDQGRKNKGGGLYVKVSMDGAPYLRKVDLRMYGGYRE 134          

HSP 2 Score: 30.8018 bits (68), Expect = 5.177e-14
Identity = 18/66 (27.27%), Postives = 27/66 (40.91%), Query Frame = 1
Query:  193 KLSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDRMVTGCSLGDVPWEMFI 390
            +L  AL+ +F CF+     S                    + + + YED+       GDVPW+MFI
Sbjct:  134 ELRDALDALFGCFSADASAS-------------------AAHFAVAYEDKDGDLMLAGDVPWDMFI 180          
BLAST of CK739586 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.518e-14
Identity = 52/128 (40.62%), Postives = 68/128 (53.12%), Query Frame = 3
Query:    6 AKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGP-GALFIKGSMDGAPYLRKVDLRTYTNYGETIFCSGEDVQLLYNWSMWIT*STREGNA-------E*EQVEGSFAWIRICAYI*GQDGDWMLVG 365
            AKAQVVGWPP+RS+RKN + +  K++       GP  A F+K SMDGAPYLRK+DLR Y +Y E           L N     T     G         E + ++   +W  + +Y   +DGDWMLVG
Sbjct:   79 AKAQVVGWPPVRSYRKNVMVSCQKSSG------GPEAAAFVKVSMDGAPYLRKIDLRMYKSYDEL-------SNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYE-DKDGDWMLVG 192          
BLAST of CK739586 vs. ExPASy Swiss-Prot
Match: IAA2_ORYSJ (Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica GN=IAA2 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.127e-13
Identity = 29/79 (36.71%), Postives = 41/79 (51.90%), Query Frame = 3
Query:    3 AAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPG---------------ALFIKGSMDGAPYLRKVDLRTYTNYGE 194
            AA A VVGWPP+RSFR+N  +++S ++ +    P                   +F+K +MDG P  RKVDL  Y  Y +
Sbjct:   66 AAAAPVVGWPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRKVDLAAYGGYAQ 144          

HSP 2 Score: 40.0466 bits (92), Expect = 1.127e-13
Identity = 22/66 (33.33%), Postives = 34/66 (51.52%), Query Frame = 1
Query:  193 KLSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDRMVTGCSLGDVPWEMFI 390
            +LS+A++K+F     G   +  A        +   +++ G EY L YED       +GDVPW+MFI
Sbjct:  144 QLSAAVDKLFR----GLLAAQSAAADGEADAAAAGEMVGGGEYTLVYEDDEGDRMLVGDVPWQMFI 205          
BLAST of CK739586 vs. ExPASy Swiss-Prot
Match: IAA4_PEA (Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.229e-13
Identity = 51/120 (42.50%), Postives = 67/120 (55.83%), Query Frame = 3
Query:    6 AKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKGSMDGAPYLRKVDLRTYTNYGETIFCSGEDVQLLYNWSMWIT*STREGNAE*EQVEGSFAWIRICAYI*GQDGDWMLVG 365
            AKA++VGWPPIRS+RKNSL        E D     G +F+K SMDGAPYLRK+DLR Y  Y E +    + ++ ++  ++    S REG       +GS            +DGDWMLVG
Sbjct:   67 AKAKIVGWPPIRSYRKNSL-------HEAD----VGGIFVKVSMDGAPYLRKIDLRVYGGYSELL----KALETMFKLTIG-EYSEREG------YKGS----EYAPTYEDKDGDWMLVG 160          
The following BLAST results are available for this feature:
BLAST of CK739586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
IAA1_ORYSJ1.105e-1850.00Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]
IAA31_ORYSJ1.175e-1750.65Auxin-responsive protein IAA31 OS=Oryza sativa sub... [more]
IAA19_ORYSJ5.333e-1744.62Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]
IAA30_ORYSJ7.670e-1661.19Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA5_ORYSJ1.313e-1543.08Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA5_ORYSI1.313e-1543.08Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA14_ORYSJ5.177e-1448.00Auxin-responsive protein IAA14 OS=Oryza sativa sub... [more]
IAA17_ARATH5.518e-1440.63Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA2_ORYSJ1.127e-1336.71Auxin-responsive protein IAA2 OS=Oryza sativa subs... [more]
IAA4_PEA1.229e-1342.50Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5973 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739586 ID=CK739586; Name=CK739586; organism=Citrus sinensis; type=EST; length=393bp
CTGCTGCCAAGGCACAGGTCGTGGGTTGGCCTCCAATAAGATCATTTAGG
AAGAATTCATTGGCAACCACTTCAAAGAACAATGATGAAGTAGATGGAAA
ACCAGGTCCTGGTGCTCTTTTTATTAAGGGTAGCATGGACGGGGCTCCTT
ATTTGAGGAAGGTAGATTTGAGAACATACACCAATTATGGGGAAACTATC
TTCTGCTCTGGAGAAGATGTTCAGTTGCTTTACAATTGGTCAATGTGGAT
CACATGAAGCACCAGGGAGGGAAATGCTGAGTGAGAGCAAGTTGAAGGAT
CTTTTGCATGGATCAGAATATGTGCTTACATATGAGGACAGGATGGTGAC
TGGATGCTCGTTGGGGGATGTGCCGTGGGAGATGTTTATTGAT
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