CK739589

Overview
NameCK739589
Unique NameCK739589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.261e-24
Identity = 73/159 (45.91%), Postives = 93/159 (58.49%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   95 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.647e-24
Identity = 74/161 (45.96%), Postives = 94/161 (58.39%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW ++V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   95 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.151e-24
Identity = 73/161 (45.34%), Postives = 94/161 (58.39%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HLSDP++
Sbjct:   98 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVN 254          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.809e-24
Identity = 73/161 (45.34%), Postives = 94/161 (58.39%), Query Frame = 3
Query:    3 FRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 431
            +RE E+IH RWA+L  LG LT E L+   G+      W  AG     EG   YLG P      +I   + ++V+++G IE  R         LDP   LYPG + FDPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP
Sbjct:   84 YRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDP---LYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADP 240          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.669e-24
Identity = 74/160 (46.25%), Postives = 94/160 (58.75%), Query Frame = 3
Query:    3 FRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR---NSE--LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 431
            +RE ELIH RWA+L  LG LT E L+   G+      W  AG     +G  +YLG        SI   + ++V+++G  E  R    SE  LD    LYPGG F DPLGLA DP+  A L++ EIK+ RLAM + LGF VQA+VTGKGP+ N   HL+DP
Sbjct:   79 YREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPF-DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.669e-24
Identity = 70/159 (44.03%), Postives = 93/159 (58.49%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            RE E+IH RWAML  LG +  E L   G+      W  AG     +G   YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:   96 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.669e-24
Identity = 70/159 (44.03%), Postives = 93/159 (58.49%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            RE E+IH RWAML  LG +  E L   G+      W  AG     +G   YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:   96 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.792e-24
Identity = 72/161 (44.72%), Postives = 94/161 (58.39%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   99 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 255          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.258e-24
Identity = 73/161 (45.34%), Postives = 93/161 (57.76%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   95 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.258e-24
Identity = 73/160 (45.62%), Postives = 93/160 (58.13%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 434
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G IE  R         LDP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A H++DP+
Sbjct:   94 RELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPV 249          
The following BLAST results are available for this feature:
BLAST of CK739589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB21_SINAL1.261e-2445.91Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_ORYSJ1.647e-2445.96Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB28_PEA2.151e-2445.34Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB2_CHLMO2.809e-2445.34Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE3.669e-2446.25Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_ARATH3.669e-2444.03Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH3.669e-2444.03Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB22_PEA4.792e-2444.72Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_TOBAC6.258e-2445.34Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_LEMGI6.258e-2445.63Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5976 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739589 ID=CK739589; Name=CK739589; organism=Citrus sinensis; type=EST; length=525bp
GGTTCCGTGAGTGTGAGCTCATTCATGGACGCTGGGCCATGTTGGCTACT
CTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGC
TGGCAAGGTAGAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTC
CATTCTCAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTAC
ATTGAGTTCCAAAGAAACTCAGAGCTTGACCCAGAGAAGAGACTCTACCC
GGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCCGAAAAGA
AAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTT
GCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCT
CAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTTCTT
GACACCTTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTT
GGCACTATTGGTATTATTATTATAT
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