CK739589
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 4.056e-23 Identity = 71/161 (44.10%), Postives = 92/161 (57.14%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437 RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R DP +YPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGP+ N A HL+DP++ Sbjct: 104 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 260
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 4.056e-23 Identity = 68/158 (43.04%), Postives = 88/158 (55.70%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLTGIT--------WQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 434 R E+IHGRWAML LG + E L W AG +G YLG P SI ++ +V+++G +E R + L LYPGG++FDPLGLA DP A L++ EIK+ RLAM + GF VQA+VTGKGPL N HL +P+ Sbjct: 93 RALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPV 250
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 5.298e-23 Identity = 68/161 (42.24%), Postives = 92/161 (57.14%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--------GITWQDAGKVELVEGSSYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437 RE E+IH RWAML LG + E L + ++ ++ G YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 5.298e-23 Identity = 69/160 (43.12%), Postives = 91/160 (56.88%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 434 RE E+IH RWAML LG E L G+ W AG EG YLG P +++ I +V+++G++E R LDP LYPGG F DPLGLA DP+ A L++ E+K+ RLAM + GF VQA+VTGKGP+ N H++DP+ Sbjct: 95 RELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAF-DPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPV 250
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 6.919e-23 Identity = 70/161 (43.48%), Postives = 92/161 (57.14%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437 RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G IE R DP +YPGG F DPLGLA DP+ A +++ EIK+ RLAM + GF VQA+VTGKGP+ N A HL+DP++ Sbjct: 108 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 6.919e-23 Identity = 70/160 (43.75%), Postives = 94/160 (58.75%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--GIT-----WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 434 RE E+IH RWAML LG + E L+ G+T W AG EG YLG P +++ I +V+++G++E R LD ++YPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGP+ N H++DP+ Sbjct: 95 RELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPV 250
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 6.919e-23 Identity = 70/161 (43.48%), Postives = 92/161 (57.14%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437 RE E+IH RWAML LG + E L+ G+ W AG EG YLG P +++ I +V+++G +E R DP +YPGG F DPLGLA DPE A L++ E+K+ RLAM + GF VQA+VTGKGPL N A HL+ P++ Sbjct: 93 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVN 249
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 6.919e-23 Identity = 70/161 (43.48%), Postives = 92/161 (57.14%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437 RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE L++ E+K RLAM++ GF VQA+VTGKGPL N A H++DP++ Sbjct: 95 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVN 251
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 6.919e-23 Identity = 70/160 (43.75%), Postives = 93/160 (58.13%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 434 RE E+IH RWAML LG + E L+ G+ W AG EG YLG P +++ I +V+++G++E R LDP +YPGG F DPLGLA DP+ A L++ EIK+ RLAM + GF VQA+VTGKGP+ N HL+DP+ Sbjct: 95 RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDP---IYPGGAF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPV 250
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 9.036e-23 Identity = 70/161 (43.48%), Postives = 92/161 (57.14%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437 RE E+IH WAML LG + E L+ G+ W AG EG YLG P +++ I +V+++G +E R DP +YPGG F DPLGLA DPE A L++ E+K+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 36 RELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 192 The following BLAST results are available for this feature:
BLAST of CK739589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739589 ID=CK739589; Name=CK739589; organism=Citrus sinensis; type=EST; length=525bpback to top |