CK739589
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.180e-22 Identity = 69/160 (43.12%), Postives = 94/160 (58.75%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 434 RE E+IH RWAML LG + E L+ G+ W AG EG YLG P +++ I +V+++G++E R LD ++YPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGP+ N + H++DP+ Sbjct: 95 RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPV 250
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.541e-22 Identity = 71/161 (44.10%), Postives = 91/161 (56.52%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSE------LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437 RE E+IH RWAML LG + E G+ W AG EG YLG P +++ I +VL++G +E R + +DP LYPGG F DPLGLA DPE A L++ E K+ RLAM + GF +QA+VTGKGPL N A HL DP++ Sbjct: 97 RELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVN 253
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.541e-22 Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437 R+ E+IH RW ML LG + E G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 96 RKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.013e-22 Identity = 70/161 (43.48%), Postives = 92/161 (57.14%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437 RE E+IH RWAML LG + E L+ G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA PE A L++ E+K+ RLAM + GF V A+VTGKGPL N A HL+DP++ Sbjct: 58 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVN 214
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 3.434e-22 Identity = 68/160 (42.50%), Postives = 94/160 (58.75%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 434 RE E+IH RWAML LG + E L+ G+ W AG EG YLG P ++ IW ++V+++G++E R LD ++YPGG F DPLGLA DP+ A L++ E+K+ RLAM + GF VQA+VTGKGP+ N H++DP+ Sbjct: 93 RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 3.434e-22 Identity = 68/160 (42.50%), Postives = 94/160 (58.75%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 434 RE E+IH RWAML LG + E L+ G+ W AG EG YLG P ++ IW ++V+++G++E R LD ++YPGG F DPLGLA DP+ A L++ E+K+ RLAM + GF VQA+VTGKGP+ N H++DP+ Sbjct: 93 RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 5.857e-22 Identity = 73/161 (45.34%), Postives = 94/161 (58.39%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLG-QPLPFSITTL-IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437 RE E+IH RWAML LG + E L G+ +W AG EG YLG Q L + + L IW +V+++G +E R DP +YPGG F DPL LA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL++P++ Sbjct: 75 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVN 231
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 7.650e-22 Identity = 69/160 (43.12%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 3 FRECELIHGRWAMLATLGALTVEWLTG-------ITWQDAGKVELVEGS-SYLGQPLPFSITTLIW---IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 431 +RE ELIH RWAML LG T E L W AG EG YLG P ++ ++V+++G IE R LDP LYPG + FDPLGLA DP+ A L++ EIK+ RLA + GF VQA+VTGKGP+ N HL++P Sbjct: 82 YRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDP---LYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANP 237
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 7.650e-22 Identity = 69/160 (43.12%), Postives = 92/160 (57.50%), Query Frame = 3 Query: 6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 434 RE E+IH RWAML LG + E L+ G+ W AG EG YLG P +++ + +V+++G IE R LD ++YPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGP+ N H++DP+ Sbjct: 95 RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 250
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.305e-21 Identity = 68/162 (41.98%), Postives = 90/162 (55.56%), Query Frame = 3 Query: 3 FRECELIHGRWAMLATLGALTVEWLT---------GITWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 431 +RE ELIH R +L LG +T E L W AG +G +YLG P +I + ++V+++G +E R LDP LYPG + FDPLGLA DP+ A L++ EIK+ RLAM A LGF VQA+VTGKGP+ N HL++P Sbjct: 101 YRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDP---LYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANP 258 The following BLAST results are available for this feature:
BLAST of CK739589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK739589 ID=CK739589; Name=CK739589; organism=Citrus sinensis; type=EST; length=525bpback to top |