CK739589

Overview
NameCK739589
Unique NameCK739589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.305e-21
Identity = 68/161 (42.24%), Postives = 94/161 (58.39%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLT--GITWQDAG------KVELVEGSSYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            RE E+IH RWAML  LG +  E L   G+ + +AG      ++    G  YLG P      +L+ I   +V+++G +E  R         +DP   LYPGG F DPLGLA  P+  A L++ EIK+ RLAM +  GF VQA+VTGKGPL + A H++DP++
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSF-DPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVN 252          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.226e-21
Identity = 70/160 (43.75%), Postives = 87/160 (54.37%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLTG-------ITWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 434
            RE E+IH RWAML  LG +  E L           W  AG     EG   Y G P      +++ I   +V+++G IE  R         LDP   L PGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDP---LLPGGAF-DPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 251          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.595e-19
Identity = 67/165 (40.61%), Postives = 86/165 (52.12%), Query Frame = 3
Query:    3 FRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 401
            +RE ELIHGRWAMLA LG    +  TGI W +AG        +  G   PFS  TL+  ++L++G++E +R  +  DP+ +                       YPGGKFFDPL LA          D +K   L+LAEIKHARLAM+A L F  +A   GK PL
Sbjct:  101 YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.083e-19
Identity = 66/161 (40.99%), Postives = 90/161 (55.90%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            RE E+IH RWA+   LG +  E L   G+      W  AG     EG  S+ G P      +++ I   +V+++G +E            +DP   LY GG F DPLGL  DPE+ A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:   94 RELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDP---LYLGGSF-DPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVN 250          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.764e-18
Identity = 67/171 (39.18%), Postives = 82/171 (47.95%), Query Frame = 3
Query:    3 FRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSEL--------DPEKRLY---------PGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTI 446
            F + EL++GRWAML   G L  E  T I       W DAGK +    SS           TL  IE ++  Y+E +R  ++        DP  + Y         PGG  F+PL  A   E K      E+ + RLAM+AFLGF VQ  VTGKGP  N   HLSDP H TI
Sbjct:   92 FVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGG-IFNPLNFAPTQEAKEK----ELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTI 246          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.303e-18
Identity = 62/170 (36.47%), Postives = 87/170 (51.18%), Query Frame = 3
Query:    9 ECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTI 446
            + EL+H RWAML   G    E+LT I      +W  AG+ E    +           TTL  IE+++IG+ E +R +++            P  +L      YPGG +FDPLG  +  P K   L+  EIK+ RLAM+A +G   Q + TG GP++N   HL+DP H TI
Sbjct:  105 QAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDT-----------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 263          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.929e-18
Identity = 64/165 (38.79%), Postives = 85/165 (51.52%), Query Frame = 3
Query:    3 FRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 401
            +RE ELIHGRWAM A LG    +  +GI W +AG        +  G   PFS  TL+  +++++G++E +R  +  DP+ +                       YPGGKFFDPL LA          D EK   L++AEIKHARLAM+A L F  +A   GK PL
Sbjct:   96 YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.143e-17
Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = 3
Query:   90 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 434
            W  AG     EG   YLG P      +++ I   +V+++G IE  R         LDP   LYPG  F DPLGLA DPE KA L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:   15 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGDAF-DPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 135          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.143e-17
Identity = 61/171 (35.67%), Postives = 87/171 (50.88%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTI 446
            ++ EL+H RWAML   G    E LT I      +W  AG+ E    +           TTL  +E+++IG+ E +R +++            P  +L      YPGG +FDPLG  +  P K   L+  EIK+ RLAM+A +G   Q + TG GP++N   HL+DP H TI
Sbjct:  104 QQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDT-----------TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 263          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.493e-17
Identity = 66/171 (38.60%), Postives = 82/171 (47.95%), Query Frame = 3
Query:    3 FRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSEL--------DPEKRLY---------PGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTI 446
            F + EL++GRWAML   G L  E  T I       W  AGK E    SS           TL  IE ++  Y+E +R  ++        DP  + Y         PGG  F+PL  A   E K      EI + RLAM+AFLGF +Q  VTGKGP +N   H+SDP H TI
Sbjct:   91 FVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSS-----------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGG-IFNPLNFAPTLEAKEK----EIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTI 245          
The following BLAST results are available for this feature:
BLAST of CK739589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB21_WHEAT1.305e-2142.24Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH2.226e-2143.75Chlorophyll a-b binding protein type I, chloroplas... [more]
CB4_SPIOL1.595e-1940.61Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB48_MAIZE2.083e-1940.99Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB24_ARATH1.764e-1839.18Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB12_PETHY2.303e-1836.47Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB4A_SOLLC3.929e-1838.79Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB22_PINSY1.143e-1746.40Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB12_SOLLC1.143e-1735.67Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA1.493e-1738.60Chlorophyll a-b binding protein P4, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_5976 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739589 ID=CK739589; Name=CK739589; organism=Citrus sinensis; type=EST; length=525bp
GGTTCCGTGAGTGTGAGCTCATTCATGGACGCTGGGCCATGTTGGCTACT
CTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGC
TGGCAAGGTAGAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTC
CATTCTCAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTAC
ATTGAGTTCCAAAGAAACTCAGAGCTTGACCCAGAGAAGAGACTCTACCC
GGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCCGAAAAGA
AAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTT
GCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCT
CAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTTCTT
GACACCTTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTT
GGCACTATTGGTATTATTATTATAT
back to top