CK739589

Overview
NameCK739589
Unique NameCK739589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.326e-17
Identity = 63/165 (38.18%), Postives = 84/165 (50.91%), Query Frame = 3
Query:    3 FRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR--------NSELD---------------PEKRLYPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 401
            +RE ELIHGRWAM A LG    +  +GI W +AG           G   PFS  +L+  ++L++G++E +R        +  +D                 ++ YPGGKFFDPL LA          D EK   L+LAEIKH+RLAM+A L F  +A   GK PL
Sbjct:   96 YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 3
Query:  171 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   11 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 102          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 3
Query:  171 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 3
Query:  171 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 55/172 (31.98%), Postives = 85/172 (49.42%), Query Frame = 3
Query:   15 ELIHGRWAMLATLGALTVEWL---------TGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE------------LDPEKRL-------YPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTI 446
            E+I+GR+AML  +GA+  E+L         T + W   G +      +Y          TL  +E+ ++G+ E +R  +            L  EK         YPGG FF+PLG   D +    L+L E+K+ RLAM+A LG+ +Q +VTG GP  N   H++DP++  +
Sbjct:  102 EVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNV 268          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 58/172 (33.72%), Postives = 84/172 (48.84%), Query Frame = 3
Query:   15 ELIHGRWAMLATLGALTVEWL---------TGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE------------LDPEKRL-------YPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTI 446
            E+I+GR+AML   GA+  E L         T + W   G +      +Y          TL  +E+ ++G+ E +R  +            L  EK L       YPGG  F+PLG   D +    L+L EIK+ RLAM+A LG+ +QA+VTG GP  N   HL+DP++  +
Sbjct:  100 EVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNV 266          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.264e-16
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  156 SITTLIWIEVLVIGYIEFQRNSELDPEK------RLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 431
            S+  ++  +VL++G +E  R     P +      RLYPGG F DPLGLA DP+    L++ EIK+ RLAM   LGF  QA+VTG+GP+ NW  HL DP
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPF-DPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDP 106          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.651e-16
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 3
Query:  171 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A H++DP++
Sbjct:  162 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.651e-16
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 3
Query:  171 IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            IW  +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A H++DP++
Sbjct:  162 IWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.803e-16
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 3
Query:  132 YLGQPLPFSITTLIWI---EVLVIGYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            YLG P      +++ I   +V+++G +E  R +   P    E  LYPGG F DPL    DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:    3 YLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSF-DPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 110          
The following BLAST results are available for this feature:
BLAST of CK739589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB4B_SOLLC3.326e-1738.18Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB2D_SOLLC9.677e-1752.08Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC9.677e-1752.08Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC9.677e-1752.08Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_PEA9.677e-1731.98Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC9.677e-1733.72Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_EUGGR1.264e-1646.94Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2F_SOLLC1.651e-1651.04Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.651e-1651.04Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_RAPSA4.803e-1645.87Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5976 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739589 ID=CK739589; Name=CK739589; organism=Citrus sinensis; type=EST; length=525bp
GGTTCCGTGAGTGTGAGCTCATTCATGGACGCTGGGCCATGTTGGCTACT
CTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGC
TGGCAAGGTAGAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTC
CATTCTCAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTAC
ATTGAGTTCCAAAGAAACTCAGAGCTTGACCCAGAGAAGAGACTCTACCC
GGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCCGAAAAGA
AAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTT
GCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCT
CAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTTCTT
GACACCTTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTT
GGCACTATTGGTATTATTATTATAT
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