CK739589

Overview
NameCK739589
Unique NameCK739589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.635e-14
Identity = 61/156 (39.10%), Postives = 81/156 (51.92%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLTGI-------TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSE------LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHL 422
            RE E+IH R AM A LG +  E L+ +        W  AG     EG   YLG P      +++ I   +V+++G +E  R +        DP   LYPG   FD LGLA D E  A L++ E+K+ RLAM +  GF VQA+V+ K  L N A HL
Sbjct:   99 RELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDP---LYPGS--FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHL 249          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.889e-12
Identity = 55/165 (33.33%), Postives = 77/165 (46.67%), Query Frame = 3
Query:    3 FRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-----------------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTI 446
            F + ++++GRWAML   G L  E LT      AG +   E     G+   F+ ++      +   Y+E +R                 +  L P +  YPG + F+PL  A    K+      E+ + RLAM+AFLGF VQ  V GKGP  N   HL+DP H TI
Sbjct:   71 FVQADVVNGRWAMLGVAGMLIPEVLT-----KAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPG-RVFNPLNFAPLENKEK-----ELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTI 224          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.495e-12
Identity = 55/149 (36.91%), Postives = 70/149 (46.98%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRN-SELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIS 449
            R  E+ HGR AMLA +GAL  ++L    W +A +      ++ +G          + I     G  E  R   E      +YPG   FDPL L  D  K+A     EIK+ RLA+ A LGF VQ  V G  PL N A HL  PL   I+
Sbjct:   41 RIAEVYHGRLAMLAVVGALVPDYLGKGIWYEAAQ------NAGIG-------LKEVAIFTAAYGVFEVARGVKENSDPTTIYPG---FDPLNLTTDYTKEA-----EIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIA 168          

HSP 2 Score: 68.5514 bits (166), Expect = 2.088e-11
Identity = 52/148 (35.14%), Postives = 73/148 (49.32%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIS 449
            R  E+ HGR AML T+G +  E L    W +AG  + V+G       +  +  T  W      G   +Q+  ELD   R YPG   FDPL L  D  + A     E+K+ RLA+ A  G   Q + TG+ PL N + HL++P+   I+
Sbjct:  226 RVAEVFHGRLAMLCTVGCIVPELLGKGAWFEAG--DSVDGLKLGFITMAIAAPTEYWRGQ---GGFNWQKG-ELD---RSYPG---FDPLNLTTDYTRAA-----EVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANIT 356          
The following BLAST results are available for this feature:
BLAST of CK739589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2_MALDO2.635e-1439.10Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB120_HORVU1.889e-1233.33Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
LH18_EUGGR5.495e-1236.91Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5976 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739589 ID=CK739589; Name=CK739589; organism=Citrus sinensis; type=EST; length=525bp
GGTTCCGTGAGTGTGAGCTCATTCATGGACGCTGGGCCATGTTGGCTACT
CTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGC
TGGCAAGGTAGAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTC
CATTCTCAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTAC
ATTGAGTTCCAAAGAAACTCAGAGCTTGACCCAGAGAAGAGACTCTACCC
GGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCCGAAAAGA
AAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTT
GCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCT
CAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTTCTT
GACACCTTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTT
GGCACTATTGGTATTATTATTATAT
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