CK739596

Overview
NameCK739596
Unique NameCK739596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length319
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8097 contig Csv1_Contig8097:550..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.998e-12
Identity = 44/91 (48.35%), Postives = 54/91 (59.34%), Query Frame = 3
Query:   48 WA-DIIKPGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            WA  +I  G V    +  N  L    D+ YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  HLAD
Sbjct:  162 WATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLAD 250          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.998e-12
Identity = 44/91 (48.35%), Postives = 54/91 (59.34%), Query Frame = 3
Query:   48 WA-DIIKPGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            WA  +I  G V    +  N  L    D+ YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  HLAD
Sbjct:  162 WATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLAD 250          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.916e-12
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 3
Query:  114 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            G D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  H+AD
Sbjct:  184 GLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVAD 248          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.916e-12
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 3
Query:  114 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            G D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  H+AD
Sbjct:  183 GLDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIAD 247          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.916e-12
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 3
Query:  114 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            G D  YPGG  FDPLG     P+   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLAD
Sbjct:  184 GLDPIYPGGA-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLAD 248          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.114e-12
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 3
Query:  114 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            G D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  H+AD
Sbjct:  184 GLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVAD 248          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.114e-12
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 3
Query:  114 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            G D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  H+AD
Sbjct:  156 GLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIAD 220          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.114e-12
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 3
Query:   93 FPNNKLTGTDVG---YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            F  N L G   G   YPGG +FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HL D
Sbjct:  176 FRINGLDGVGEGNDLYPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDD 251          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.114e-12
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  117 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            TD  YPGG  FDPLG     PE + EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HLAD
Sbjct:  176 TDPIYPGGS-FDPLGLAD-DPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 239          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.114e-12
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLAD 314
            YPGG  FDPLG+ S  P K +EL+ KEIKNGRLAMLA +G   Q   Y GTGP++NL  HLAD
Sbjct:  167 YPGGA-FDPLGF-SKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLAD 227          
The following BLAST results are available for this feature:
BLAST of CK739596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB22_ARATH2.998e-1248.35Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH2.998e-1248.35Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_TOBAC3.916e-1256.72Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_LEMGI3.916e-1256.72Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI3.916e-1256.72Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB26_PETSP5.114e-1256.72Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC5.114e-1256.72Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_HORVU5.114e-1250.65Chlorophyll a-b binding protein of LHCII type III,... [more]
CB22_SOYBN5.114e-1256.06Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB121_HORVU5.114e-1261.90Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5983 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739596 ID=CK739596; Name=CK739596; organism=Citrus sinensis; type=EST; length=319bp
TGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGG
GCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGATCTTCCCCAA
CAACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCTTTGGTTTG
ACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGGAGCTGAGG
ACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTGATGGGTGC
TTGGTTCCAGCACATTTACACCGGCACCGGCCCCATTGACAATCTCATTG
CTCACCTTGCTGATTCCTG
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