CK739596
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11 Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 3 Query: 129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314 YPGG FDPLG PE+ EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLAD Sbjct: 188 YPGGS-FDPLGLAE-DPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 247
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11 Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 3 Query: 129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314 YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLAD Sbjct: 189 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 248
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11 Identity = 38/67 (56.72%), Postives = 43/67 (64.18%), Query Frame = 3 Query: 114 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314 G D YPG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL HLAD Sbjct: 69 GLDPLYPGDA-FDPLGLAD-DPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLAD 133
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11 Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 3 Query: 129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314 YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLAD Sbjct: 185 YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 244
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11 Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 3 Query: 129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314 YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLAD Sbjct: 190 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 249
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11 Identity = 38/67 (56.72%), Postives = 43/67 (64.18%), Query Frame = 3 Query: 114 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314 G D PGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL HLAD Sbjct: 185 GLDPLLPGGA-FDPLGLAD-DPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLAD 249
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.538e-11 Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 3 Query: 114 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314 G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL H+ D Sbjct: 184 GLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIND 248
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.538e-11 Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 3 Query: 129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314 YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL HLAD Sbjct: 189 YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLAD 248
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.538e-11 Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 3 Query: 114 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314 G D YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG GPI NL H+AD Sbjct: 184 GLDPLYPGGA-FDPLGLAD-DPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVAD 248
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.315e-11 Identity = 37/69 (53.62%), Postives = 43/69 (62.32%), Query Frame = 3 Query: 108 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314 L D YPGG FDPLG P+ EL+ KEIKNGRLAM + +G + Q I TG GP+ NL HLAD Sbjct: 170 LDDLDTLYPGGP-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLAD 236 The following BLAST results are available for this feature:
BLAST of CK739596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739596 ID=CK739596; Name=CK739596; organism=Citrus sinensis; type=EST; length=319bpback to top |