CK739596

Overview
NameCK739596
Unique NameCK739596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length319
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8097 contig Csv1_Contig8097:550..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 3
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            YPGG  FDPLG     PE+  EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HLAD
Sbjct:  188 YPGGS-FDPLGLAE-DPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 247          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLAD
Sbjct:  189 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 248          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11
Identity = 38/67 (56.72%), Postives = 43/67 (64.18%), Query Frame = 3
Query:  114 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            G D  YPG   FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLAD
Sbjct:   69 GLDPLYPGDA-FDPLGLAD-DPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLAD 133          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLAD
Sbjct:  185 YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 244          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLAD
Sbjct:  190 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 249          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11
Identity = 38/67 (56.72%), Postives = 43/67 (64.18%), Query Frame = 3
Query:  114 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            G D   PGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLAD
Sbjct:  185 GLDPLLPGGA-FDPLGLAD-DPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLAD 249          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.538e-11
Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 3
Query:  114 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            G D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  H+ D
Sbjct:  184 GLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIND 248          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.538e-11
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            YPGG  FDPLG     PE   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  HLAD
Sbjct:  189 YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLAD 248          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.538e-11
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 3
Query:  114 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            G D  YPGG  FDPLG     P+   EL+ KE+KNGRLAM ++ G + Q I TG GPI NL  H+AD
Sbjct:  184 GLDPLYPGGA-FDPLGLAD-DPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVAD 248          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.315e-11
Identity = 37/69 (53.62%), Postives = 43/69 (62.32%), Query Frame = 3
Query:  108 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            L   D  YPGG  FDPLG     P+   EL+ KEIKNGRLAM + +G + Q I TG GP+ NL  HLAD
Sbjct:  170 LDDLDTLYPGGP-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLAD 236          
The following BLAST results are available for this feature:
BLAST of CK739596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB23_APIGR1.943e-1156.45Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_TOBAC1.943e-1158.06Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_PINSY1.943e-1156.72Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB22_ORYSJ1.943e-1158.06Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_TOBAC1.943e-1158.06Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_PINTH1.943e-1156.72Chlorophyll a-b binding protein type I, chloroplas... [more]
CB24_SOLLC2.538e-1155.22Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_POLMU2.538e-1158.06Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB215_PEA2.538e-1153.73Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_DUNTE3.315e-1153.62Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5983 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739596 ID=CK739596; Name=CK739596; organism=Citrus sinensis; type=EST; length=319bp
TGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGG
GCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGATCTTCCCCAA
CAACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCTTTGGTTTG
ACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGGAGCTGAGG
ACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTGATGGGTGC
TTGGTTCCAGCACATTTACACCGGCACCGGCCCCATTGACAATCTCATTG
CTCACCTTGCTGATTCCTG
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