CK739596

Overview
NameCK739596
Unique NameCK739596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length319
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.315e-11
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  H+AD
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIAD 250          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.315e-11
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  H+AD
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIAD 250          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.315e-11
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q + TG GP++NL  HLAD
Sbjct:  190 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLAD 249          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.315e-11
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            YPGG  FDPLG     PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HLAD
Sbjct:  193 YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 252          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.315e-11
Identity = 36/62 (58.06%), Postives = 41/62 (66.13%), Query Frame = 3
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            YPGG  FDPLG     PE   EL  KEIKNGRLAM ++ G + Q I TG GP++NL  HLAD
Sbjct:  190 YPGGS-FDPLGLAD-DPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 249          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.329e-11
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            Y GG  FDPLG G   PE+  EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HL D
Sbjct:  188 YLGGS-FDPLGLGD-DPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTD 247          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.329e-11
Identity = 45/102 (44.12%), Postives = 55/102 (53.92%), Query Frame = 3
Query:    9 VEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            V+++ +G  EG R         VN  P        G D  YPG   FDPLG     P+   EL+ KEIKNGRLAM A +G + Q I TG GPI+NL  HLA+
Sbjct:  172 VQVVLMGLVEGYR---------VNGGPAGE-----GLDPLYPGEA-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLAN 257          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.329e-11
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  117 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            TD  YPGG  FDPLG     P+   +++ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLAD
Sbjct:  198 TDPIYPGGN-FDPLGLAD-DPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLAD 261          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.329e-11
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 3
Query:  117 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 311
            TD  YPGG  FDPLG     PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HLA
Sbjct:  183 TDPIYPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 245          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.654e-11
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            YPGG  FDPLG     PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  H+AD
Sbjct:  186 YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIAD 245          
The following BLAST results are available for this feature:
BLAST of CK739596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB2F_SOLLC3.315e-1156.45Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.315e-1156.45Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB25_NICPL3.315e-1156.45Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_PEA3.315e-1156.45Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_PETSP3.315e-1158.06Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB48_MAIZE4.329e-1158.06Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_DUNSA4.329e-1144.12Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_PYRPY4.329e-1154.55Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_SOYBN4.329e-1155.38Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE5.654e-1154.84Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5983 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739596 ID=CK739596; Name=CK739596; organism=Citrus sinensis; type=EST; length=319bp
TGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGG
GCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGATCTTCCCCAA
CAACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCTTTGGTTTG
ACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGGAGCTGAGG
ACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTGATGGGTGC
TTGGTTCCAGCACATTTACACCGGCACCGGCCCCATTGACAATCTCATTG
CTCACCTTGCTGATTCCTG
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