CK739596

Overview
NameCK739596
Unique NameCK739596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length319
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8097 contig Csv1_Contig8097:550..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.385e-11
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 3 
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            YPGG  FDPLG     PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HL+D
Sbjct:  192 YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSD 251
[Close]
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.385e-11
Identity = 35/62 (56.45%), Postives = 41/62 (66.13%), Query Frame = 3 
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            YPGG  FDPLG     PE   EL+ K IKNGRLAM ++ G + Q I TG GP++NL  HLAD
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 250
[Close]
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.385e-11
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 3 
Query:  117 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            TD  YPGG  FDPL      PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLA+
Sbjct:  165 TDPIYPGGS-FDPLALAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAE 228
[Close]
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.385e-11
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 3 
Query:  120 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            D+ YPGG  FDPL      PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLAD
Sbjct:   45 DLLYPGGS-FDPLA-SLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 107
The following BLAST results are available for this feature:
BLAST of CK739596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB28_PEA7.385e-1154.84Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB25_TOBAC7.385e-1156.45Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB21_SOYBN7.385e-1154.55Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_RAPSA7.385e-1155.38Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5983 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739596 ID=CK739596; Name=CK739596; organism=Citrus sinensis; type=EST; length=319bp
TGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGG
GCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGATCTTCCCCAA
CAACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCTTTGGTTTG
ACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGGAGCTGAGG
ACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTGATGGGTGC
TTGGTTCCAGCACATTTACACCGGCACCGGCCCCATTGACAATCTCATTG
CTCACCTTGCTGATTCCTG
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