CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_SCHPO (Phosphoglycerate kinase OS=Schizosaccharomyces pombe GN=pgk1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.249e-17
Identity = 44/74 (59.46%), Postives = 51/74 (68.92%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATA---IPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V + LP D V ADKF  D ++KV  ATA   IPDGWMGLD GP S   F E + T+KT++WNGP GVFEFD FA
Sbjct:  275 VEVFLPVDFVTADKF--DKDAKVGSATAEEGIPDGWMGLDCGPKSSAKFAEVITTSKTIVWNGPAGVFEFDNFA 346          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_SCHMA (Phosphoglycerate kinase OS=Schistosoma mansoni GN=PGK PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.249e-17
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKV-VPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V + LP D V ADKFA D N+++    + I DGWMGLDIGP +++ F++ +   KT++WNGPMGVFE DKFA
Sbjct:  276 VAIHLPVDFVTADKFADDANTEIRTIQSGIADGWMGLDIGPKTIEEFSKVISRAKTIVWNGPMGVFEMDKFA 347          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_LEUCK (Phosphoglycerate kinase OS=Leuconostoc citreum (strain KM20) GN=pgk PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.249e-17
Identity = 43/73 (58.90%), Postives = 51/73 (69.86%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATA-IPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  L+LP D + AD F+ D  ++VV ATA IPDG+MGLDIGP SVK   + L   KTV+WNGPMGVFE   FA
Sbjct:  265 GDKLVLPVDSIAADAFSNDAKTEVVDATAGIPDGYMGLDIGPKSVKLLQDTLADAKTVVWNGPMGVFEMPNFA 337          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_AQUAE (Phosphoglycerate kinase OS=Aquifex aeolicus GN=pgk PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.249e-17
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            + L LP D VI  + + +  +KVVP   IPDGWMGLDIGP SV+   E +   +T++WNGPMGVFE DKF
Sbjct:  260 IKLYLPVDFVIGQEVSENTPTKVVPWQEIPDGWMGLDIGPVSVELVKEIISDAQTIVWNGPMGVFEIDKF 329          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_NITSB (Phosphoglycerate kinase OS=Nitratiruptor sp. (strain SB155-2) GN=pgk PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.208e-16
Identity = 44/74 (59.46%), Postives = 50/74 (67.57%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNS--KVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV L LP D V+A +   DPN+  K V    IP  WMGLDIGP S + F EALD  +T+IWNGPMGVFE DKFA
Sbjct:  261 GVKLYLPVDFVVAPEL--DPNAPVKYVTFQEIPKTWMGLDIGPASTRLFKEALDEVQTIIWNGPMGVFEIDKFA 332          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_MYCUA (Phosphoglycerate kinase OS=Mycobacterium ulcerans (strain Agy99) GN=pgk PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.208e-16
Identity = 42/69 (60.87%), Postives = 47/69 (68.12%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            L LP DVV+ +KFAADP  + V A AIP   MGLDIGP SVK F   L   KT+ WNGPMGVFEF  +A
Sbjct:  268 LRLPVDVVVTEKFAADPPPQTVAADAIPADTMGLDIGPGSVKRFAALLSNAKTIFWNGPMGVFEFPAYA 336          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CHLTE (Phosphoglycerate kinase OS=Chlorobium tepidum GN=pgk PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.208e-16
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V LLLP DVV+A + +AD  S+V P +AI  G +GLDIGP +++T+ + +   KTV+WNGPMGVFE D+FA
Sbjct:  260 VRLLLPEDVVVAGEISADAPSRVEPVSAISAGMIGLDIGPATIETYRKEILDAKTVLWNGPMGVFEIDQFA 330          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CANAL (Phosphoglycerate kinase OS=Candida albicans GN=PGK1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.208e-16
Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPN-SKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V L+LP D V ADKF  D   S    A  IPD WMGLD GP SV+ F +A+   KT++WNGP GVFEF+KFA
Sbjct:  277 VELILPVDFVTADKFDKDAKTSSATDAEGIPDNWMGLDCGPKSVELFQQAVAKAKTIVWNGPPGVFEFEKFA 348          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_TRIRE (Phosphoglycerate kinase OS=Trichoderma reesei GN=pgk1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNS-KVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V L+LP D + ADKF  D N+      + IPDGWMGLD G  S++ + EA+   KT++WNGP GVFEFDKFA
Sbjct:  277 VKLVLPVDYITADKFDKDANTGTATDESGIPDGWMGLDCGEKSIELYKEAIADAKTILWNGPAGVFEFDKFA 348          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_MYCLE (Phosphoglycerate kinase OS=Mycobacterium leprae GN=pgk PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 40/69 (57.97%), Postives = 46/69 (66.67%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            L LP D+V+ +KF AD   + V A AIPDG MGLDIGP SVK F   L    T+ WNGPMGVFEF  +A
Sbjct:  272 LRLPMDIVVTEKFVADSPPQTVAADAIPDGLMGLDIGPESVKRFATLLSNASTIFWNGPMGVFEFPAYA 340          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_SCHPO9.249e-1759.46Phosphoglycerate kinase OS=Schizosaccharomyces pom... [more]
PGK_SCHMA9.249e-1754.17Phosphoglycerate kinase OS=Schistosoma mansoni GN=... [more]
PGK_LEUCK9.249e-1758.90Phosphoglycerate kinase OS=Leuconostoc citreum (st... [more]
PGK_AQUAE9.249e-1754.29Phosphoglycerate kinase OS=Aquifex aeolicus GN=pgk... [more]
PGK_NITSB1.208e-1659.46Phosphoglycerate kinase OS=Nitratiruptor sp. (stra... [more]
PGK_MYCUA1.208e-1660.87Phosphoglycerate kinase OS=Mycobacterium ulcerans ... [more]
PGK_CHLTE1.208e-1654.93Phosphoglycerate kinase OS=Chlorobium tepidum GN=p... [more]
PGK_CANAL1.208e-1656.94Phosphoglycerate kinase OS=Candida albicans GN=PGK... [more]
PGK_TRIRE1.578e-1654.17Phosphoglycerate kinase OS=Trichoderma reesei GN=p... [more]
PGK_MYCLE1.578e-1657.97Phosphoglycerate kinase OS=Mycobacterium leprae GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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