CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CHLAA (Phosphoglycerate kinase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pgk PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.060e-16
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  LLLP DVVIAD F+AD   +VV  + IP GW  LDIGP +++ ++  +   +TVIWNGPMGVFE + FA
Sbjct:  260 GARLLLPVDVVIADAFSADAQRQVVDVSDIPAGWRVLDIGPKTIERYSAEIRAARTVIWNGPMGVFELEPFA 331          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_BEUC1 (Phosphoglycerate kinase OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=pgk PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.060e-16
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV ++LP+D+V A+ FAAD   +VV A AIP   +GLDIGP S + F   +   KTV+WNGPMGVFEFD FA
Sbjct:  260 GVTIVLPTDIVAAEAFAADAPHQVVAADAIPADSIGLDIGPESGEAFAAVIRGAKTVVWNGPMGVFEFDAFA 331          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_THESQ (Phosphoglycerate kinase OS=Thermotoga sp. (strain RQ2) GN=pgk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.691e-16
Identity = 41/73 (56.16%), Postives = 48/73 (65.75%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPAT-AIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV ++LP D VIA K       KVV     IP+GWMGLDIGP +V+ F + L   KTV+WNGPMGVFE D FA
Sbjct:  257 GVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETVELFKQKLSDAKTVVWNGPMGVFEIDDFA 329          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_THEP1 (Phosphoglycerate kinase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=pgk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.691e-16
Identity = 41/73 (56.16%), Postives = 48/73 (65.75%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPAT-AIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV ++LP D VIA K       KVV     IP+GWMGLDIGP +V+ F + L   KTV+WNGPMGVFE D FA
Sbjct:  257 GVEIVLPVDTVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETVELFKQKLSDAKTVVWNGPMGVFEIDDFA 329          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CORU7 (Phosphoglycerate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=pgk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.691e-16
Identity = 39/69 (56.52%), Postives = 45/69 (65.22%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            ++LP+DVV A+ F+ D   K V  + IP GWMGLDIGP S   F   L   KTV WNGPMGVFEF  FA
Sbjct:  267 IVLPTDVVAAENFSKDAEHKAVGLSEIPSGWMGLDIGPESADAFAAVLGEAKTVFWNGPMGVFEFPAFA 335          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CORA7 (Phosphoglycerate kinase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.691e-16
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  ++LP D+V A +F A   +KVV    IP+GW  LDIGP SVK F+E + ++KTV WNGPMGVFE + F+
Sbjct:  265 GDKIVLPVDLVAATEFDAQAENKVVALDGIPEGWQSLDIGPESVKKFDEVIASSKTVFWNGPMGVFEMEAFS 336          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PELTS (Phosphoglycerate kinase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=pgk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.515e-16
Identity = 40/71 (56.34%), Postives = 46/71 (64.79%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V LLLP DVV+A   A     + VP   IP  WM LDIGP S++ F EAL   +TV+WNGPMGVFE D FA
Sbjct:  258 VKLLLPVDVVVAPGPAPGQEQRTVPVDQIPAEWMALDIGPESIRLFTEALRAARTVVWNGPMGVFEMDPFA 328          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_MYCAV (Phosphoglycerate kinase (Fragment) OS=Mycobacterium avium GN=pgk PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.515e-16
Identity = 41/69 (59.42%), Postives = 47/69 (68.12%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            L LP D+V AD+ AAD   + VPA AIPD  MG+DIGP SVK F   L   +T+ WNGPMGVFEF  FA
Sbjct:  271 LRLPVDMVAADRLAADAAPQTVPADAIPDDLMGVDIGPGSVKRFTALLSNAETMFWNGPMGVFEFPAFA 339          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CAMLR (Phosphoglycerate kinase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=pgk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.515e-16
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV + LP DV  A   + +   K  P   IP GWMGLDIGP SV+ F EAL   +T+ WNGPMGVFE DKF+
Sbjct:  261 GVKIYLPVDVTAAQTCSQEAVMKYTPVQEIPAGWMGLDIGPASVRLFKEALSDAQTIWWNGPMGVFEIDKFS 332          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 83.5741 bits (205), Expect = 3.515e-16
Identity = 40/73 (54.79%), Postives = 48/73 (65.75%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPAT-AIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV ++LP D VIA K       KVV     IP+GWMGLDIGP +++ F + L   KTV+WNGPMGVFE D FA
Sbjct:  257 GVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGVFEIDDFA 329          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_CHLAA2.060e-1654.17Phosphoglycerate kinase OS=Chloroflexus aurantiacu... [more]
PGK_BEUC12.060e-1656.94Phosphoglycerate kinase OS=Beutenbergia cavernae (... [more]
PGK_THESQ2.691e-1656.16Phosphoglycerate kinase OS=Thermotoga sp. (strain ... [more]
PGK_THEP12.691e-1656.16Phosphoglycerate kinase OS=Thermotoga petrophila (... [more]
PGK_CORU72.691e-1656.52Phosphoglycerate kinase OS=Corynebacterium urealyt... [more]
PGK_CORA72.691e-1652.78Phosphoglycerate kinase OS=Corynebacterium aurimuc... [more]
PGK_PELTS3.515e-1656.34Phosphoglycerate kinase OS=Pelotomaculum thermopro... [more]
PGK_MYCAV3.515e-1659.42Phosphoglycerate kinase (Fragment) OS=Mycobacteriu... [more]
PGK_CAMLR3.515e-1654.17Phosphoglycerate kinase OS=Campylobacter lari (str... [more]
PGKT_THEMA3.515e-1654.79Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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