CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PORGI (Phosphoglycerate kinase OS=Porphyromonas gingivalis GN=pgk PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.590e-16
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GVNL+L  D  +AD+F  D  ++V     IPD WMG+DIGP S++ F + +  +KT++WNGP GVFEFD F+
Sbjct:  280 GVNLILSVDTKVADRFDNDAATQVCSNMEIPDDWMGMDIGPRSIEKFRKVILESKTILWNGPTGVFEFDNFS 351          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_LACPL (Phosphoglycerate kinase OS=Lactobacillus plantarum GN=pgk PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.590e-16
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  L+LPSD ++A+KF  D  SKVV  + IPDG+M LDIGP S++ F + L   KTV+WNGPMGVFE   +A
Sbjct:  264 GDKLVLPSDSIVAEKFDNDVPSKVVEGS-IPDGYMALDIGPKSIEEFEDVLRDAKTVVWNGPMGVFEMSNYA 334          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_GEOKA (Phosphoglycerate kinase OS=Geobacillus kaustophilus GN=pgk PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.590e-16
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV   +P DVV+AD+FA D N+KVV   AIP  W  LDIGP + + + + +  +K V+WNGPMGVFE + FA
Sbjct:  257 GVRFYMPVDVVVADRFANDANTKVVAIDAIPSDWEALDIGPKTRELYRDVIRQSKLVVWNGPMGVFEMEAFA 328          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_DESAA (Phosphoglycerate kinase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=pgk PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.590e-16
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G    +P D V+AD+F+ D  SK+VP   IP  WM +DIGP +   ++E L + KT+IWNGPMGVFE D F+
Sbjct:  257 GTAFYIPVDAVVADRFSPDAESKIVPIREIPPEWMIMDIGPATALLYSEVLASAKTIIWNGPMGVFEMDAFS 328          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CANMA (Phosphoglycerate kinase OS=Candida maltosa GN=PGK1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.590e-16
Identity = 42/72 (58.33%), Postives = 47/72 (65.28%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPN-SKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V L+LP D V ADKF  D   S     T IPD WMGLD GP S K F +A+   KT++WNGP GVFEFDKFA
Sbjct:  277 VELILPVDFVTADKFDKDAEVSTADDVTGIPDKWMGLDCGPKSRKLFADAVAKAKTIVWNGPPGVFEFDKFA 348          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_YEAST (Phosphoglycerate kinase OS=Saccharomyces cerevisiae GN=PGK1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.995e-16
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVP-ATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV ++LP D +IAD F+AD N+K V     IP GW GLD GP S K F   +   KT++WNGP GVFEF+KFA
Sbjct:  275 GVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFA 347          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_LEUMM (Phosphoglycerate kinase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=pgk PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.995e-16
Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPAT-AIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  L+LP D + AD F+ D  ++VV A   IPDG+MGLDIGP SVK   + L   KTV+WNGPMGVFE   FA
Sbjct:  265 GDKLVLPIDSIAADAFSNDAKTEVVDAEDGIPDGYMGLDIGPKSVKLLQDTLSDAKTVVWNGPMGVFEMSNFA 337          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CLOD6 (Phosphoglycerate kinase OS=Clostridium difficile (strain 630) GN=pgk PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.995e-16
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GVNLLLP DVV+AD FA D    V     + + +MGLD+GP ++  F + +  +KTV+WNGPMGVFEF+ FA
Sbjct:  263 GVNLLLPVDVVMADHFAPDATPIVTEDANVKEDYMGLDMGPKTIANFVKTIKESKTVVWNGPMGVFEFENFA 334          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_OENOB (Phosphoglycerate kinase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.830e-16
Identity = 40/72 (55.56%), Postives = 47/72 (65.28%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  L+LP D V A+ FA D  +KV     IPDGWMGLDIGP +++ F   L   KTV+WNGPMGVFE   FA
Sbjct:  266 GDKLVLPEDSVAAESFANDVPTKVFE-NGIPDGWMGLDIGPKTIEKFKNTLKGAKTVVWNGPMGVFEMSNFA 336          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_LEPBP (Phosphoglycerate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=pgk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.830e-16
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV+L +P D +IAD F  +  +K V    I DGWMG+DIGP ++  + +A+   KT++WNGPMGVFE DKF+
Sbjct:  257 GVDLQIPVDHIIADAFDPNAKTKSVDKMGIIDGWMGMDIGPKTIDNYVKAIKDAKTILWNGPMGVFEMDKFS 328          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_PORGI4.590e-1650.00Phosphoglycerate kinase OS=Porphyromonas gingivali... [more]
PGK_LACPL4.590e-1655.56Phosphoglycerate kinase OS=Lactobacillus plantarum... [more]
PGK_GEOKA4.590e-1651.39Phosphoglycerate kinase OS=Geobacillus kaustophilu... [more]
PGK_DESAA4.590e-1650.00Phosphoglycerate kinase OS=Desulfatibacillum alken... [more]
PGK_CANMA4.590e-1658.33Phosphoglycerate kinase OS=Candida maltosa GN=PGK1... [more]
PGK_YEAST5.995e-1654.79Phosphoglycerate kinase OS=Saccharomyces cerevisia... [more]
PGK_LEUMM5.995e-1656.16Phosphoglycerate kinase OS=Leuconostoc mesenteroid... [more]
PGK_CLOD65.995e-1652.78Phosphoglycerate kinase OS=Clostridium difficile (... [more]
PGK_OENOB7.830e-1655.56Phosphoglycerate kinase OS=Oenococcus oeni (strain... [more]
PGK_LEPBP7.830e-1650.00Phosphoglycerate kinase OS=Leptospira biflexa sero... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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