CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_LEPBA (Phosphoglycerate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=pgk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.830e-16
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV+L +P D +IAD F  +  +K V    I DGWMG+DIGP ++  + +A+   KT++WNGPMGVFE DKF+
Sbjct:  257 GVDLQIPVDHIIADAFDPNAKTKSVDKMGIIDGWMGMDIGPKTIDNYVKAIKDAKTILWNGPMGVFEMDKFS 328          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_BACHD (Phosphoglycerate kinase OS=Bacillus halodurans GN=pgk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.830e-16
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GVN  +P D ++AD F+ D N+K V    IP  W  LDIGP + +T+   + ++K VIWNGPMGVFE D FA
Sbjct:  257 GVNFYVPQDAIVADDFSNDANTKAVDIDQIPADWEALDIGPKTRETYRNVIQSSKLVIWNGPMGVFELDAFA 328          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_ANOFW (Phosphoglycerate kinase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=pgk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.830e-16
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GVN  +P D V+AD F+ D N KVV    IP  W GLDIGP + + + + +  +K VIWNGPMGVFE D FA
Sbjct:  257 GVNFYMPVDAVVADDFSNDANKKVVNIDEIPSDWEGLDIGPKTRELYRDVILKSKLVIWNGPMGVFEMDAFA 328          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_AGABI (Phosphoglycerate kinase OS=Agaricus bisporus GN=pgkA PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.830e-16
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPAT-AIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V ++ P D V+ DKF A+ N K+V     +PDGWMGLD+GP S + F EA+   KT++WNGP GVFEF  FA
Sbjct:  277 VEIVFPVDYVVGDKFDANANHKIVTDDEGVPDGWMGLDVGPKSNELFREAVLKAKTILWNGPPGVFEFPAFA 348          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_MYCMM (Phosphoglycerate kinase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=pgk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.023e-15
Identity = 41/69 (59.42%), Postives = 46/69 (66.67%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            L LP DVV+ +KFAAD   + V A AIP   MGLDIGP SVK F   L   KT+ WNGPMGVFEF  +A
Sbjct:  268 LRLPVDVVVTEKFAADSPPQTVAADAIPADTMGLDIGPGSVKRFAALLSNAKTIFWNGPMGVFEFPAYA 336          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_KLULA (Phosphoglycerate kinase OS=Kluyveromyces lactis GN=PGK PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.023e-15
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVP-ATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V ++LP+D VI DKF+AD N+KVV     IP GW GLD GP S K F   +   KT++WNGP GVFEF  FA
Sbjct:  276 VKIVLPTDFVIGDKFSADANTKVVTDKEGIPSGWQGLDNGPESRKAFAATVAEAKTIVWNGPPGVFEFAPFA 347          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CAMHC (Phosphoglycerate kinase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=pgk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.023e-15
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV + +P D ++A   + D   K V    IP GWMGLDIGP ++  F EAL   +T+ WNGPMGVFE DKFA
Sbjct:  263 GVKIYIPVDAIVAPAISQDSVMKNVTVQEIPAGWMGLDIGPATIALFREALSDAQTIWWNGPMGVFEIDKFA 334          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_BACSK (Phosphoglycerate kinase OS=Bacillus clausii (strain KSM-K16) GN=pgk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.023e-15
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV   +P DV++AD F+ D N K V  + IP  W  LDIGP + KT+   L  +K VIWNGPMGVFE + FA
Sbjct:  257 GVKFYMPEDVIVADDFSDDANKKEVAISGIPADWEALDIGPKTRKTYEAVLKASKLVIWNGPMGVFELESFA 328          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_THELT (Phosphoglycerate kinase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=pgk PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.336e-15
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPAT-AIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V ++LP D ++A K  A    K       I DGWMGLDIGP ++K F EAL   KTV+WNGPMGVFE + FA
Sbjct:  259 VEIVLPVDAIVAQKIEAGVEKKTADLKDGIDDGWMGLDIGPKTIKVFEEALKNAKTVVWNGPMGVFEIEDFA 330          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_RUBXD (Phosphoglycerate kinase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=pgk PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.336e-15
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            L+LP DVV+A++      ++ VP   IP+GWMGLDIGP +V+ F   +   +T+ WNGPMGVFE D FA
Sbjct:  256 LVLPVDVVVAERMEEGARTRTVPVEEIPEGWMGLDIGPRTVELFRRHILQARTIFWNGPMGVFEIDAFA 324          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_LEPBA7.830e-1650.00Phosphoglycerate kinase OS=Leptospira biflexa sero... [more]
PGK_BACHD7.830e-1650.00Phosphoglycerate kinase OS=Bacillus halodurans GN=... [more]
PGK_ANOFW7.830e-1652.78Phosphoglycerate kinase OS=Anoxybacillus flavither... [more]
PGK_AGABI7.830e-1652.78Phosphoglycerate kinase OS=Agaricus bisporus GN=pg... [more]
PGK_MYCMM1.023e-1559.42Phosphoglycerate kinase OS=Mycobacterium marinum (... [more]
PGK_KLULA1.023e-1555.56Phosphoglycerate kinase OS=Kluyveromyces lactis GN... [more]
PGK_CAMHC1.023e-1551.39Phosphoglycerate kinase OS=Campylobacter hominis (... [more]
PGK_BACSK1.023e-1551.39Phosphoglycerate kinase OS=Bacillus clausii (strai... [more]
PGK_THELT1.336e-1552.78Phosphoglycerate kinase OS=Thermotoga lettingae (s... [more]
PGK_RUBXD1.336e-1550.72Phosphoglycerate kinase OS=Rubrobacter xylanophilu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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