CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_SYNPW (Phosphoglycerate kinase OS=Synechococcus sp. (strain WH7803) GN=pgk PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.507e-24
Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLP+DVV+AD FA D NS+V   TAIPDGWMGLDIGP +VK F  AL   +TVIWNGPMGVFEF+KFA
Sbjct:  262 GVELLLPTDVVLADNFAPDANSQVADVTAIPDGWMGLDIGPDAVKVFQAALADCQTVIWNGPMGVFEFEKFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_SYNY3 (Phosphoglycerate kinase OS=Synechocystis sp. (strain PCC 6803) GN=pgk PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.981e-24
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV  LLP+DVV+AD FA D N++ V   AIPDGWMGLDIGP SVKTF +AL    TVIWNGPMGVFEFDKFA
Sbjct:  262 GVEFLLPTDVVVADNFAPDANAQTVGVDAIPDGWMGLDIGPDSVKTFQDALAGCGTVIWNGPMGVFEFDKFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_SYNP6 (Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pgk PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.020e-23
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLP DVV+ADKFA D N+K V   AIPDGWMGLDIGP SVK F  AL   ++VIWNGPMGVFEFD+FA
Sbjct:  262 GVQLLLPVDVVVADKFAPDANAKTVAIDAIPDGWMGLDIGPESVKQFEGALADCRSVIWNGPMGVFEFDQFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PROM4 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=pgk PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.020e-23
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLP+DVV+AD F+ D NS++    +IP+GWMGLDIGP SVK F +AL+  +TVIWNGPMGVFEFDKFA
Sbjct:  262 GVELLLPTDVVLADNFSPDANSQIAQINSIPEGWMGLDIGPDSVKLFQDALEDCQTVIWNGPMGVFEFDKFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_MICAN (Phosphoglycerate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=pgk PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.332e-23
Identity = 50/72 (69.44%), Postives = 56/72 (77.78%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV  LLP+DVV+ADKF  D  S++V    IPDGWMGLDIGP SVK F EAL   K+V+WNGPMGVFEFDKFA
Sbjct:  263 GVEFLLPTDVVLADKFDKDAESQIVKVENIPDGWMGLDIGPESVKVFQEALSNCKSVLWNGPMGVFEFDKFA 334          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PROM3 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=pgk PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.968e-23
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLP+DVV+AD F+ D NS+ V   AIPDGWMGLDIGP S+  F +AL   +TVIWNGPMGVFEFDKFA
Sbjct:  262 GVQLLLPTDVVLADDFSPDANSQTVSIDAIPDGWMGLDIGPDSINLFQDALADCQTVIWNGPMGVFEFDKFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CYAP8 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 8801) GN=pgk PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.877e-23
Identity = 51/72 (70.83%), Postives = 56/72 (77.78%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV+ LLP+DVV+AD FA D N+K V   AI DGWMGLDIGP SVK F  AL   K+VIWNGPMGVFEFDKFA
Sbjct:  261 GVDFLLPTDVVLADNFAPDANAKTVSIDAIEDGWMGLDIGPESVKVFQAALADCKSVIWNGPMGVFEFDKFA 332          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CYAP7 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 7424) GN=pgk PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.877e-23
Identity = 51/72 (70.83%), Postives = 56/72 (77.78%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLP+DVV+AD F A+ N K V    IPDGWMGLDIGP SVK F +AL   K+VIWNGPMGVFEFDKFA
Sbjct:  262 GVQLLLPTDVVVADAFDANANDKTVKIEEIPDGWMGLDIGPDSVKLFQDALADCKSVIWNGPMGVFEFDKFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_DEIRA (Phosphoglycerate kinase OS=Deinococcus radiodurans GN=pgk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.063e-23
Identity = 50/72 (69.44%), Postives = 56/72 (77.78%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  LLLP+D V ADKFAAD  SKVVPA  IPDGWMGLDIGP + + + +AL   KTV WNGPMGVFEFD+FA
Sbjct:  275 GDKLLLPTDAVAADKFAADAQSKVVPADQIPDGWMGLDIGPDTQRAYADALQGAKTVFWNGPMGVFEFDQFA 346          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PROMA (Phosphoglycerate kinase OS=Prochlorococcus marinus GN=pgk PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.637e-23
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLPSDVV+AD F+ D +S++V   +IP+GWMGLDIG  SVK F +AL   KTVIWNGPMGVFEFDKFA
Sbjct:  262 GVQLLLPSDVVLADNFSPDASSQMVQIDSIPEGWMGLDIGKESVKLFQDALADCKTVIWNGPMGVFEFDKFA 333          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_SYNPW3.507e-2472.22Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNY35.981e-2472.22Phosphoglycerate kinase OS=Synechocystis sp. (stra... [more]
PGK_SYNP61.020e-2372.22Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_PROM41.020e-2368.06Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_MICAN1.332e-2369.44Phosphoglycerate kinase OS=Microcystis aeruginosa ... [more]
PGK_PROM32.968e-2369.44Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_CYAP83.877e-2370.83Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_CYAP73.877e-2370.83Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_DEIRA5.063e-2369.44Phosphoglycerate kinase OS=Deinococcus radiodurans... [more]
PGK_PROMA8.637e-2369.44Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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