CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_SYNP2 (Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=pgk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.128e-22
Identity = 49/69 (71.01%), Postives = 54/69 (78.26%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            +LLP+DV++ADKFA D  +K V   AIPDGWMGLDIG  SVK F EALD   T IWNGPMGVFEFDKFA
Sbjct:  262 ILLPTDVIVADKFAPDAEAKTVSVDAIPDGWMGLDIGADSVKVFQEALDGCGTAIWNGPMGVFEFDKFA 330          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PROMM (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=pgk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.128e-22
Identity = 50/72 (69.44%), Postives = 56/72 (77.78%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLP+DVV+AD FA   NS+ V   AIPDGWMGLDIGP S+  F +AL   +TVIWNGPMGVFEFDKFA
Sbjct:  262 GVQLLLPTDVVLADDFAPAANSQTVSIDAIPDGWMGLDIGPDSINLFQDALADCQTVIWNGPMGVFEFDKFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_TRIEI (Phosphoglycerate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=pgk PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.924e-22
Identity = 48/72 (66.67%), Postives = 56/72 (77.78%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV +LLP+DVV+ADKF  + N++ V   AIPDGWMGLDIGP S K F +AL   KTVIWNGPMGVFE +KFA
Sbjct:  261 GVTMLLPTDVVVADKFDPEANTQTVSIEAIPDGWMGLDIGPESAKVFQDALADCKTVIWNGPMGVFEMEKFA 332          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_SYNJA (Phosphoglycerate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pgk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.598e-22
Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLP DVV+AD+F  D N++ V   AIP+ WMGLDIGP SVK F  AL   KTV+WNGPMGVFEFD+FA
Sbjct:  273 GVELLLPVDVVVADRFDKDANAQTVSIHAIPEDWMGLDIGPESVKAFQAALQGCKTVVWNGPMGVFEFDRFA 344          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PROMS (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain AS9601) GN=pgk PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.598e-22
Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLP+DVV+AD+F+ D NSK+    AI   WMGLDIGP S+K F  AL   KT+IWNGPMGVFEFDKFA
Sbjct:  262 GVELLLPTDVVLADEFSPDANSKISQIDAISGNWMGLDIGPDSIKVFQNALAECKTIIWNGPMGVFEFDKFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PROM9 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=pgk PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.247e-21
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLP+DVV+AD+F+ D NSK+    +I   WMGLDIGP S+K F  AL   KT+IWNGPMGVFEFDKFA
Sbjct:  262 GVELLLPTDVVLADEFSPDANSKISQIDSISGNWMGLDIGPDSIKVFQNALAECKTIIWNGPMGVFEFDKFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PROM2 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=pgk PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.629e-21
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLP+DVV+AD+F+ D NSK+    +I   WMGLDIGP S+K F  AL   KT+IWNGPMGVFEFDKFA
Sbjct:  262 GVELLLPTDVVLADEFSPDANSKISRIDSISGNWMGLDIGPDSIKVFQNALAECKTIIWNGPMGVFEFDKFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_SYNJB (Phosphoglycerate kinase OS=Synechococcus sp. GN=pgk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.190e-21
Identity = 46/72 (63.89%), Postives = 54/72 (75.00%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLP DVV+AD+F  D  ++ V   AIP+ WMGLDIGP SVK F  AL   +TV+WNGPMGVFEFD+FA
Sbjct:  273 GVELLLPVDVVVADRFDKDAQAQTVSIHAIPEDWMGLDIGPESVKAFQSALQGCQTVVWNGPMGVFEFDRFA 344          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PROMP (Phosphoglycerate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=pgk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.190e-21
Identity = 47/72 (65.28%), Postives = 54/72 (75.00%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLPSDV++A++F+ D  SKV    AI   WMGLDIGP S+K F  AL   KT+IWNGPMGVFEFDKFA
Sbjct:  262 GVELLLPSDVLLANEFSPDAESKVSQIDAISGDWMGLDIGPQSIKVFQNALAECKTIIWNGPMGVFEFDKFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_RHOSR (Phosphoglycerate kinase OS=Rhodococcus sp. (strain RHA1) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.084e-21
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 2
Query:   62 LPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            +P DVVIAD F+AD  SK+V    IPDGWMGLDIGP SV+ F   L + KTV WNGPMGVFEF+KFA
Sbjct:  269 IPQDVVIADSFSADAESKIVSVLEIPDGWMGLDIGPQSVRRFAAILTSAKTVFWNGPMGVFEFEKFA 335          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_SYNP21.128e-2271.01Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_PROMM1.128e-2269.44Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_TRIEI1.924e-2266.67Phosphoglycerate kinase OS=Trichodesmium erythraeu... [more]
PGK_SYNJA5.598e-2266.67Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_PROMS5.598e-2266.67Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM91.247e-2165.28Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM21.629e-2165.28Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_SYNJB6.190e-2163.89Phosphoglycerate kinase OS=Synechococcus sp. GN=pg... [more]
PGK_PROMP6.190e-2165.28Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_RHOSR8.084e-2167.16Phosphoglycerate kinase OS=Rhodococcus sp. (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
back to top