CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_SPICI (Phosphoglycerate kinase OS=Spiroplasma citri GN=pgk PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            ++LP D + A +FA  P +KV     I DG+MGLDIGP +++ F + L   KTV WNGPMGVFEF  ++
Sbjct:  279 IILPIDALEAPEFADVP-AKVTTGFDIDDGYMGLDIGPKTIELFKKELADAKTVTWNGPMGVFEFKNYS 346          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PSEMY (Phosphoglycerate kinase OS=Pseudomonas mendocina (strain ymp) GN=pgk PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V++ LP DVV+A  FA D  + V     + D  M LDIGP + + F E L  ++T++WNGP+GVFEFD+F
Sbjct:  249 VSVPLPVDVVVAKAFAEDAEATVKSVKDVADDDMILDIGPQTAQQFAEMLKASQTILWNGPVGVFEFDQF 318          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PSEE4 (Phosphoglycerate kinase OS=Pseudomonas entomophila (strain L48) GN=pgk PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V++ LP DVV+A  FA D  + V     +    M LDIGP + + F E L T+KT++WNGP+GVFEFD+F
Sbjct:  249 VSVPLPVDVVVAKAFAEDAEATVKAIADVAADDMILDIGPKTAEQFAELLKTSKTILWNGPVGVFEFDQF 318          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PSEAE (Phosphoglycerate kinase OS=Pseudomonas aeruginosa GN=pgk PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V + LP DVV+A +FA    + V     + D  M LDIGP +   F E L T+KT++WNGP+GVFEFD+F
Sbjct:  249 VKVPLPVDVVVAKEFAESAVATVKAIAEVADDDMILDIGPQTAAQFAELLKTSKTILWNGPVGVFEFDQF 318          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PSEAB (Phosphoglycerate kinase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=pgk PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V + LP DVV+A +FA    + V     + D  M LDIGP +   F E L T+KT++WNGP+GVFEFD+F
Sbjct:  249 VKVPLPVDVVVAKEFAESAVATVKAIAEVADDDMILDIGPQTAAQFAELLKTSKTILWNGPVGVFEFDQF 318          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_PSEA8 (Phosphoglycerate kinase OS=Pseudomonas aeruginosa (strain LESB58) GN=pgk PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V + LP DVV+A +FA    + V     + D  M LDIGP +   F E L T+KT++WNGP+GVFEFD+F
Sbjct:  249 VKVPLPVDVVVAKEFAESAVATVKAIAEVADDDMILDIGPQTAAQFAELLKTSKTILWNGPVGVFEFDQF 318          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_NEIG2 (Phosphoglycerate kinase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=pgk PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G ++ LP+DVV+A  FAAD  + V     + +  M LDIGP S     E L    TV+WNGP+GVFEFD+FA
Sbjct:  254 GGSVPLPTDVVVAKAFAADAEAVVKDIADVAEDEMILDIGPKSAAALAELLKAAGTVVWNGPVGVFEFDQFA 325          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_HAHCH (Phosphoglycerate kinase OS=Hahella chejuensis (strain KCTC 2396) GN=pgk PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            V + LP+DVV A  F+    + V P   + D  M LDIGP S     E L + KT++WNGP+GVFEFD+F
Sbjct:  250 VQIPLPTDVVTAKAFSESAEASVKPIAEVTDDDMILDIGPQSAAALAELLKSAKTILWNGPVGVFEFDQF 319          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CLAMS (Phosphoglycerate kinase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=pgk PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAI---PDG--WMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV ++LP+DVV+AD F+AD   +V  A AI   P G   +GLDIGP +   F   +  + TV WNGPMGVFE + FA
Sbjct:  262 GVKIVLPTDVVVADGFSADAAHEVTRADAIEGTPAGAKGLGLDIGPETADAFATIIRGSTTVFWNGPMGVFELEPFA 338          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CLAM3 (Phosphoglycerate kinase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=pgk PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAI---PDG--WMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV ++LP+DVV+AD F+AD   +V  A AI   P G   +GLDIGP +   F   +  + TV WNGPMGVFE + FA
Sbjct:  262 GVKIVLPTDVVVADGFSADAAHEVTRADAIEGTPAGAKGLGLDIGPETADAFATIIRGSTTVFWNGPMGVFELEPFA 338          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_SPICI6.859e-1249.28Phosphoglycerate kinase OS=Spiroplasma citri GN=pg... [more]
PGK_PSEMY6.859e-1247.14Phosphoglycerate kinase OS=Pseudomonas mendocina (... [more]
PGK_PSEE46.859e-1248.57Phosphoglycerate kinase OS=Pseudomonas entomophila... [more]
PGK_PSEAE6.859e-1248.57Phosphoglycerate kinase OS=Pseudomonas aeruginosa ... [more]
PGK_PSEAB6.859e-1248.57Phosphoglycerate kinase OS=Pseudomonas aeruginosa ... [more]
PGK_PSEA86.859e-1248.57Phosphoglycerate kinase OS=Pseudomonas aeruginosa ... [more]
PGK_NEIG26.859e-1248.61Phosphoglycerate kinase OS=Neisseria gonorrhoeae (... [more]
PGK_HAHCH6.859e-1247.14Phosphoglycerate kinase OS=Hahella chejuensis (str... [more]
PGK_CLAMS6.859e-1249.35Phosphoglycerate kinase OS=Clavibacter michiganens... [more]
PGK_CLAM36.859e-1249.35Phosphoglycerate kinase OS=Clavibacter michiganens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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