CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_BORRA (Phosphoglycerate kinase OS=Borrelia recurrentis (strain A1) GN=pgk PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V ++LP D V+A +F      + V +  IPD  +G+DIG  ++K     L + KTVIWNGP+GVFEFD FA
Sbjct:  258 VEVILPIDHVVASEFQEYSMPEYVDSVNIPDSKIGMDIGEKTLKKIEGVLSSAKTVIWNGPLGVFEFDSFA 328          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_BORDL (Phosphoglycerate kinase OS=Borrelia duttonii (strain Ly) GN=pgk PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V ++LP D V+A +F      + V +  IPD  +G+DIG  ++K     L + KTVIWNGP+GVFEFD FA
Sbjct:  258 VEVILPIDHVVASEFQEYSMPEYVDSVNIPDSKIGMDIGEKTLKKIEGVLSSAKTVIWNGPLGVFEFDSFA 328          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_STRS7 (Phosphoglycerate kinase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=pgk PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.959e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            L+LP D   A+ FA     KV    A+  G++GLDIGP S+  F+EAL   KTV+WNGPMGVFE   F
Sbjct:  264 LILPVDSKEANAFADYTEVKVTEGEAVDAGFLGLDIGPKSIAKFDEALTGAKTVVWNGPMGVFENPDF 331          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_STREM (Phosphoglycerate kinase OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=pgk PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.959e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            L+LP D   A+ FA     KV    A+  G++GLDIGP S+  F+EAL   KTV+WNGPMGVFE   F
Sbjct:  264 LILPVDSKEANAFADYTEVKVTEGEAVDAGFLGLDIGPKSIAKFDEALTGAKTVVWNGPMGVFENPDF 331          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_STRE4 (Phosphoglycerate kinase OS=Streptococcus equi subsp. equi (strain 4047) GN=pgk PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.959e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 2
Query:   56 LLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            L+LP D   A+ FA     KV    A+  G++GLDIGP S+  F+EAL   KTV+WNGPMGVFE   F
Sbjct:  264 LVLPVDSKEANAFADYTEVKVTEGEAVDTGFLGLDIGPKSIAKFDEALTGAKTVVWNGPMGVFENPDF 331          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_SILST (Phosphoglycerate kinase OS=Silicibacter sp. (strain TM1040) GN=pgk PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.959e-12
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKF 259
            G  +LLPSDVV+A +F A  +++ VPA A P   M LD GP SV   +     +KT+IWNGP+G FE   F
Sbjct:  257 GCTILLPSDVVVAREFKAGADNETVPADACPADAMILDAGPASVAAISTVFAESKTLIWNGPLGAFEIAPF 327          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_HELHP (Phosphoglycerate kinase OS=Helicobacter hepaticus GN=pgk PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.959e-12
Identity = 29/71 (40.85%), Postives = 46/71 (64.79%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V + LP DVV  D      + K+ PA  IP+G+M +D+GP + K F+E +  ++T+IWNGP+G++E   F+
Sbjct:  267 VKIYLPVDVVSTDDIKEHRHIKITPAQDIPEGFMAVDMGPATSKLFSEVVRDSQTIIWNGPLGIYEIQAFS 337          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_BORGA (Phosphoglycerate kinase OS=Borrelia garinii GN=pgk PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.959e-12
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 2
Query:   50 VNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            V ++LP D ++AD F  +   + + +  IP+  +G+D+G  ++K   + + T KT+IWNGP+GVFEFD F+
Sbjct:  259 VKVILPLDHIVADDFNKNSTPEYIDSFDIPENKIGMDVGGKTLKEIEKVIKTAKTIIWNGPLGVFEFDSFS 329          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_ONYPE (Phosphoglycerate kinase OS=Onion yellows phytoplasma GN=pgk PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.170e-11
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G  ++LP D V   +F+    + V     I D  MGLDIGP +++ F   L T +TV+WNGP+GVFEF++F+
Sbjct:  260 GKKIVLPKDFVCGKEFSPTTQAAVYSYDNISDDVMGLDIGPQTIELFKTYLQTAQTVVWNGPVGVFEFEQFS 331          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_NEIM0 (Phosphoglycerate kinase OS=Neisseria meningitidis serogroup C (strain 053442) GN=pgk PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.170e-11
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            G ++ LP+DVV+A  FAAD  + V     + +  M LDIGP S     + L    TV+WNGP+GVFEFD+FA
Sbjct:  254 GGSVPLPTDVVVAKAFAADAEAVVKDIADVAEDEMILDIGPKSAAALADLLKAADTVVWNGPVGVFEFDQFA 325          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGK_BORRA6.859e-1246.48Phosphoglycerate kinase OS=Borrelia recurrentis (s... [more]
PGK_BORDL6.859e-1246.48Phosphoglycerate kinase OS=Borrelia duttonii (stra... [more]
PGK_STRS78.959e-1251.47Phosphoglycerate kinase OS=Streptococcus equi subs... [more]
PGK_STREM8.959e-1251.47Phosphoglycerate kinase OS=Streptococcus equi subs... [more]
PGK_STRE48.959e-1251.47Phosphoglycerate kinase OS=Streptococcus equi subs... [more]
PGK_SILST8.959e-1247.89Phosphoglycerate kinase OS=Silicibacter sp. (strai... [more]
PGK_HELHP8.959e-1240.85Phosphoglycerate kinase OS=Helicobacter hepaticus ... [more]
PGK_BORGA8.959e-1239.44Phosphoglycerate kinase OS=Borrelia garinii GN=pgk... [more]
PGK_ONYPE1.170e-1143.06Phosphoglycerate kinase OS=Onion yellows phytoplas... [more]
PGK_NEIM01.170e-1147.22Phosphoglycerate kinase OS=Neisseria meningitidis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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